Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A17
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    26   0.24 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   1.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.0  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 250 RASEPMGSDVTVIEDSGDIKLVYEETE 170
           +A +PM + V + +D GD  ++Y+ ++
Sbjct: 195 QAMDPMNTTVYIADDRGDALIIYQNSD 221


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 250 RASEPMGSDVTVIEDSGDIKLVYEETE 170
           +A +P+ + V + +D GD  +VY+ ++
Sbjct: 195 QAMDPVNTIVYMADDKGDALIVYQNSD 221


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -1

Query: 460 METQDEKPATQTEAPKPTKIDSFIKFKAPEKS 365
           ++TQ E          PT  + +  FKA E S
Sbjct: 142 VDTQGENAVKVNSVQVPTDDEPYASFKAMEDS 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,912
Number of Sequences: 438
Number of extensions: 2108
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)