Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A16
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    29   0.40 
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   2.8  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   3.7  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    26   3.7  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    26   5.0  
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    26   5.0  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    25   6.5  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   6.5  

>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 423 DYYYYTSITTDFAKTTFETKYINKDKQYNLFS 518
           D  YYT I   F K  +E  Y+NKD  Y  F+
Sbjct: 287 DRVYYTDIKHHFRKFLYEKIYMNKDGFYITFN 318


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 398 GGRAHSPPGVKWLLEPIDIYN 336
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 142 FITRYYSFTAEVNREHLLSTYFIRKIGTRLRDSNTGASXLH 20
           F+T YY + A+V  ++    Y     G+ LR+ N   + L+
Sbjct: 456 FLTNYYMYLADVPYKYAKKLYSTLNGGSNLRNINENLAALN 496


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 420 KDYYYYTSITTDFAKTTFETKYINKDKQYNLFSI*PQTISNXKIWTINKYYLCMHV 587
           K+Y   TS   +FAK+T +T Y    K     ++  + I +   W+I++ +   H+
Sbjct: 303 KEYASNTSALAEFAKSTVKTLY---SKSPTSIAVTNRLIKSAAKWSISEAFYYDHI 355


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 371 HQVGCELVHPSKQ*KIKRLLLLHFY 445
           H +G E+V PSKQ  +   L LHF+
Sbjct: 227 HFIGPEVVVPSKQPNLPSPLSLHFH 251


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +1

Query: 244 AVMSFGSKGG----AAVVTILRP*NLYLKVGGAFTL*MSMGSSNHL 369
           AV+SFG+KGG      VV  L+  +    VG A TL ++   + HL
Sbjct: 344 AVLSFGAKGGPDQSRKVVNALKLASQLANVGDAKTLVIAPAYTTHL 389


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 139 ITRYYSFTAEVNREHLLSTYF 77
           +T+YY+F  E  + H L+T F
Sbjct: 256 VTQYYAFVDESQKVHCLNTLF 276


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 142 FITRYYSFTAEVNREHLLSTYFIRKIGTRLRDSN 41
           F+T YY++  +V  ++    Y I   G+ LR+ N
Sbjct: 456 FLTNYYNYIPDVPYKYAKKLYSILNGGSTLRNVN 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,800
Number of Sequences: 5004
Number of extensions: 54464
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)