Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A16
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               28   6.8  
SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)                 27   9.0  

>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 286 LQRLPHPSNRNSLLLHGRNKQ 224
           +QR P P+ RNS+ LHG   Q
Sbjct: 30  VQRRPEPTPRNSIFLHGLRAQ 50


>SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)
          Length = 896

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -2

Query: 328 RHPP*DISSKVSV*LQRLPHPSNRNSLLLHGRNKQGGGTYPRGLRRCPTTS 176
           RHPP     +++    RLPHP+ R  +L   R           +   P TS
Sbjct: 463 RHPPRTTGPELAC-PNRLPHPTRRPGVLYRDRTPPSSANATNMVEEVPLTS 512


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,946,281
Number of Sequences: 59808
Number of extensions: 413183
Number of successful extensions: 860
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)