Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A16
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37720.1 68415.m04625 expressed protein                             28   4.2  
At5g53330.1 68418.m06628 expressed protein                             27   9.7  
At4g32440.2 68417.m04618 agenet domain-containing protein contai...    27   9.7  
At4g32440.1 68417.m04617 agenet domain-containing protein contai...    27   9.7  

>At2g37720.1 68415.m04625 expressed protein 
          Length = 482

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = +2

Query: 38  GVRIPQAGTNFSNEIRTQQMFTIDFRGEGIISCNKNQTRKIIICVITGGRTSSESARVGT 217
           G  IP+   N  N +R  Q  TI F G+   S  + Q + ++ C+ TGG+ S E   VG+
Sbjct: 193 GCNIPEF--NRVNFLRRMQNKTIAFIGD---SLGREQFQSLM-CMATGGKESPEVQNVGS 246


>At5g53330.1 68418.m06628 expressed protein
          Length = 221

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 235 RNKQGGGTYPRGLRRCPTTSDYANYN 158
           RNK GG +YPR +   P+TS   + N
Sbjct: 6   RNKSGGPSYPRPMYGPPSTSPSPSSN 31


>At4g32440.2 68417.m04618 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 393

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 199 LRRCPTTSDYANYNFAGLIFITRYYSFTAEVNREHLLSTYF-IRKIGT 59
           +R CP   D   ++   L+ +   +S+ A   RE L   Y+ +R +GT
Sbjct: 59  IRPCPPLVDVERWDTGELVEVLDNFSWKAATVREELSGHYYVVRLLGT 106


>At4g32440.1 68417.m04617 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 377

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 199 LRRCPTTSDYANYNFAGLIFITRYYSFTAEVNREHLLSTYF-IRKIGT 59
           +R CP   D   ++   L+ +   +S+ A   RE L   Y+ +R +GT
Sbjct: 59  IRPCPPLVDVERWDTGELVEVLDNFSWKAATVREELSGHYYVVRLLGT 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,670,411
Number of Sequences: 28952
Number of extensions: 289393
Number of successful extensions: 527
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)