Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A15
         (451 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)                29   1.8  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    29   2.3  
SB_31479| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.60028e...    27   9.5  
SB_24420| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_1381| Best HMM Match : TP2 (HMM E-Value=5.2)                        27   9.5  

>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
          Length = 620

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 121 NSVRADVRKFSADLKSFVFSANVLQLTGFL 210
           NS RADV  F AD+ SF     VL++T  +
Sbjct: 549 NSFRADVNNFRADITSFRADIIVLEVTSLV 578


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 279 QDNDNIGVEGYNTGYETSNGIKAQETG 199
           +D++++G E  N GYE  NG+   + G
Sbjct: 31  EDDNSVGDEDDNVGYEGDNGVGGDDNG 57


>SB_31479| Best HMM Match : Peptidase_M13_N (HMM
           E-Value=1.60028e-42)
          Length = 627

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 372 LIVCFVLRLLFEDSERLTDHRPAEFI 449
           L+VC VL +L+  ++ L + +PAE +
Sbjct: 37  LVVCIVLGVLYYQAKALKNDKPAEVV 62


>SB_24420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 153 GEFAYIGPDGVTYAVTYVANEGG 85
           G + YIGP G+ +  T V    G
Sbjct: 255 GSYCYIGPQGIVHGTTIVVMNAG 277


>SB_1381| Best HMM Match : TP2 (HMM E-Value=5.2)
          Length = 428

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 372 LIVCFVLRLLFEDSERLTDHRPAEFI 449
           L+VC VL +L+  ++ L + +PAE +
Sbjct: 308 LVVCIVLGVLYYQAKALKNDKPAEVV 333


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,477,808
Number of Sequences: 59808
Number of extensions: 159649
Number of successful extensions: 341
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)