Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A15
         (451 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t...    28   2.5  
At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containi...    27   7.7  

>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein low similarity to
           glucoamylase S1/S2 [Precursor] from Saccharomyces
           cerevisiae [SP|P08640], proteophosphoglycan from
           Leishmania major [GI:5420387]; contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 256

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 119 VTPSGPMYANSPRTSRASFSVPMFFS*PVS*ALIPLEVS*PVLYPSTPMLSLS 277
           +TPS P  ++SP   R S       S PVS +  P   S P +  S+P+++ S
Sbjct: 151 ITPSSPAVSHSPPPVRHSSPPVSHSSPPVSHSSPPTSRSSPAVSHSSPVVAAS 203


>At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 554

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 138 IGPDGVTYAVTYVANEGGFQPSAPHIPKA 52
           +G  G +   ++VA   GF+PS P  P A
Sbjct: 413 LGASGSSSGNSFVAPRSGFEPSIPSAPPA 441


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,287,855
Number of Sequences: 28952
Number of extensions: 114304
Number of successful extensions: 291
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)