Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_A13
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 129 3e-31
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 55 7e-09
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 50 2e-07
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 49 6e-07
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 47 2e-06
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 46 3e-06
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 46 4e-06
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 46 6e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 45 7e-06
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 45 1e-05
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 44 1e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 43 3e-05
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 42 5e-05
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 7e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 42 9e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 41 2e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 2e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 37 0.002
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.003
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 36 0.004
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 36 0.006
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 36 0.006
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 36 0.006
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 36 0.006
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.014
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 34 0.014
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 34 0.018
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 33 0.024
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 33 0.024
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 30 0.22
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 30 0.29
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 30 0.29
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 30 0.29
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.52
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 28 0.90
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 28 1.2
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 27 1.6
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 27 2.1
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 3.6
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ... 26 4.8
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 4.8
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 4.8
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 8.4
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 129 bits (312), Expect = 3e-31
Identities = 57/105 (54%), Positives = 79/105 (75%)
Frame = -1
Query: 444 ISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKY 265
+S Y + FK + + K S+ +Y+GNLSFYTTEEQIY L+S+CG+IRR+IMG+D++
Sbjct: 10 VSPYLIRRFKNDLRALDAV-KQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRF 68
Query: 264 KKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIE 130
KTPCGFCFVEY+ +DA + ++YI+ T LD+RIIR D D G+ E
Sbjct: 69 TKTPCGFCFVEYFENQDALDSLKYISRTSLDERIIRADLDHGYEE 113
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 55.2 bits (127), Expect = 7e-09
Identities = 29/77 (37%), Positives = 45/77 (58%)
Frame = -1
Query: 378 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 199
S+TL + NLS T EE++ +L+ R G I+RV + DK GF FV YY R+ A
Sbjct: 201 SATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKAR 260
Query: 198 RYINGTRLDDRIIRCDW 148
++G ++ I+RC++
Sbjct: 261 DRLDGYGWNNLILRCEF 277
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 50.4 bits (115), Expect = 2e-07
Identities = 23/91 (25%), Positives = 50/91 (54%)
Frame = -1
Query: 429 DQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPC 250
D + R+++E + + ++Y+GN+ + T E++ ++ CG + RV + DK+ P
Sbjct: 39 DNETEALRNDKESI--DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPK 96
Query: 249 GFCFVEYYAREDAENCMRYINGTRLDDRIIR 157
GF ++E+ N + +NG+ L +R ++
Sbjct: 97 GFAYIEFSEPSLVPNAL-LLNGSMLHERPLK 126
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 48.8 bits (111), Expect = 6e-07
Identities = 25/83 (30%), Positives = 45/83 (54%)
Frame = -1
Query: 396 EKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYARE 217
++L + S T+++GNLSF TE+ + + CGDI+ + + D GF +V + +
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418
Query: 216 DAENCMRYINGTRLDDRIIRCDW 148
A+ C+ +NG + R R D+
Sbjct: 419 SAKKCVE-MNGHFIAGRPCRLDF 440
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/77 (27%), Positives = 39/77 (50%)
Frame = -1
Query: 378 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 199
S++LY+G L TE ++EL++ G + + + D + G+ +V ++ ED E +
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
Query: 198 RYINGTRLDDRIIRCDW 148
+N T + R R W
Sbjct: 139 DELNYTLIKGRPCRIMW 155
Score = 40.7 bits (91), Expect = 2e-04
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = -1
Query: 423 HFKGSRSEQEKL--LKASST-LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTP 253
H R Q K+ LKA+ T +YI NL TE++ +L+ + G+I + + D+ K P
Sbjct: 242 HHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK-P 300
Query: 252 CGFCFVEYYAREDAENCMRYIN 187
GF FV Y E A+ + +N
Sbjct: 301 RGFGFVNYANHECAQKAVDELN 322
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 46.4 bits (105), Expect = 3e-06
Identities = 20/80 (25%), Positives = 41/80 (51%)
Frame = -1
Query: 387 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 208
+ S +Y+GN+ + EEQ+ +++ + G ++ + +D P G+ F EY+ A
Sbjct: 1 MNPSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAA 60
Query: 207 NCMRYINGTRLDDRIIRCDW 148
+ +R +N R +R D+
Sbjct: 61 SAVRNLNNYDAGTRRLRVDF 80
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 46.0 bits (104), Expect = 4e-06
Identities = 29/96 (30%), Positives = 46/96 (47%)
Frame = -1
Query: 459 NSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIM 280
+S SS R SRS +E L T+ + NL+ T+E I E++ G I + M
Sbjct: 75 SSRDSFSSNRSYSSSLSRSPEEPL----RTILVENLTRNVTKEHIAEIFGIYGLIDHIFM 130
Query: 279 GLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLD 172
+ K + G+C++EY + A N + +N LD
Sbjct: 131 PIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELD 166
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 45.6 bits (103), Expect = 6e-06
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Frame = -1
Query: 468 DSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRR 289
+++ +E S H +S +++G LS T + +I L+ G +R+
Sbjct: 13 NTVQDQVEASVDAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRK 72
Query: 288 VIMGLDKYKK----TPCGFCFVEYYAREDAENCMRYINGTRLDDRII 160
V + + ++ P G FV + +ED + + +NG LDDR I
Sbjct: 73 VTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREI 119
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 45.2 bits (102), Expect = 7e-06
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Frame = -1
Query: 426 QHFKGSRSEQEK---LLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKT 256
Q + + SEQE+ L+ + L++ NL++ E+ + L+ G + +V M +DK
Sbjct: 303 QKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNN 362
Query: 255 PCGFCFVEYYAREDAENCMRYINGTRLDDRII 160
P GF +++++ +DA ++ R++
Sbjct: 363 PKGFAYIDFHDADDAVRAYLELDAKPFQGRLL 394
Score = 32.3 bits (70), Expect = 0.055
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -1
Query: 378 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTP-----CGFCFVEYYARED 214
++T+Y+ NL+F T +E+ +++ ++ K P GF FVE+ +
Sbjct: 618 TATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKAS 677
Query: 213 AENCMRYINGTRLD 172
A M +NG LD
Sbjct: 678 AVAAMHAMNGFVLD 691
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/80 (23%), Positives = 45/80 (56%)
Frame = -1
Query: 387 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 208
+ A + +++GN+ + +E+Q+ E++++ G ++ + LD + G+ F E++ E
Sbjct: 3 MTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTA 62
Query: 207 NCMRYINGTRLDDRIIRCDW 148
+R +N + L R IR ++
Sbjct: 63 MAVRKLNNSELGPRKIRVEF 82
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 44.4 bits (100), Expect = 1e-05
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = -1
Query: 384 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 205
+ +S L+I NLSF T E++Y+L+ R G +R++ +G + G FV Y +DA
Sbjct: 9 EVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTR---GTAFVVYENVQDARR 65
Query: 204 CMRYINGTRLDDRII 160
++G DR +
Sbjct: 66 ACEKLSGYNFMDRYL 80
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 43.2 bits (97), Expect = 3e-05
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Frame = -1
Query: 462 MNSSIEISSYRDQHF-KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRV 286
MNS +I +Q K S + S+ +YIGNL F E+ I ++S G+ +
Sbjct: 1 MNSIRQIERLNEQELDKPFSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDI 60
Query: 285 IMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGF 136
+ DK GF F++Y + + + +L DR++R D A +
Sbjct: 61 NLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASY 110
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 42.3 bits (95), Expect = 5e-05
Identities = 20/73 (27%), Positives = 39/73 (53%)
Frame = -1
Query: 375 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 196
+T+Y+GNL T+ ++EL + G + + + D+ + + GF F E+ +D E +
Sbjct: 11 ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQ 70
Query: 195 YINGTRLDDRIIR 157
+N +L + IR
Sbjct: 71 ILNQVKLFGKPIR 83
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 41.9 bits (94), Expect = 7e-05
Identities = 25/76 (32%), Positives = 40/76 (52%)
Frame = -1
Query: 384 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 205
+ +T+++GNL+ TE +Y + G+I V + K K + FVE+ EDA+
Sbjct: 3 RRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHR-KEKAVDRSYAFVEFDEPEDAKE 61
Query: 204 CMRYINGTRLDDRIIR 157
M +N + L DR IR
Sbjct: 62 AMENMNYSILCDRCIR 77
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 41.5 bits (93), Expect = 9e-05
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = -1
Query: 405 SEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRV-IMGLDKYKKTPCGFCFVEY 229
S Q + SS L++GNL F TT+ + E + + G IRRV +M + K GF FV++
Sbjct: 218 SIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCK-GFGFVDF 276
Query: 228 YAREDAENCMR 196
D + CM+
Sbjct: 277 ---PDIDTCMK 284
Score = 28.7 bits (61), Expect = 0.68
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -1
Query: 417 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSR 307
K QE+ ++ +++GNLSF+TT+E + + + R
Sbjct: 91 KEEGESQEESKRSPWGIWVGNLSFHTTKEILTDFFVR 127
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 40.7 bits (91), Expect = 2e-04
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -1
Query: 369 LYIGNLSFYTTEEQIYEL-YSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 193
L I NL + + Q E +S+ G +R + + K CGF FV R+ AE M
Sbjct: 109 LIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNS 167
Query: 192 INGTRLDDRIIRCDW 148
+NGT +D R I DW
Sbjct: 168 LNGTEIDGRPIAVDW 182
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 40.3 bits (90), Expect = 2e-04
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = -1
Query: 381 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 202
A+ST+++G LS + +EE++ L+ G+I V + K CG FV++ R+ AE
Sbjct: 301 ANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGK----GCG--FVQFVNRQSAEIA 354
Query: 201 MRYINGTRLDDRIIRCDW 148
+ + G L + IR W
Sbjct: 355 INQLQGYPLGNSRIRLSW 372
Score = 39.1 bits (87), Expect = 5e-04
Identities = 19/73 (26%), Positives = 40/73 (54%)
Frame = -1
Query: 405 SEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYY 226
S +++ + +TL++G L + TE I ++++ G +V + ++Y G+CFVE+
Sbjct: 83 SSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFA 142
Query: 225 AREDAENCMRYIN 187
+ +A + M N
Sbjct: 143 SPHEASSAMSMNN 155
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/77 (23%), Positives = 40/77 (51%)
Frame = -1
Query: 378 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 199
S +Y+GNL + T++ + +L++ G + R + + ++ GF V++ DA + +
Sbjct: 279 SDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSK-GFGVVQFENENDAASSI 337
Query: 198 RYINGTRLDDRIIRCDW 148
+NG R R ++ +
Sbjct: 338 EKLNGYRYGGRPLQLSY 354
Score = 31.1 bits (67), Expect = 0.13
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Frame = -1
Query: 432 RDQHFKGSRSEQE-------KLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRV-IMG 277
R HF G +E++ K + +Y+GNLS+ ++ E + G++ I+
Sbjct: 40 RGLHFDGEHTERDPHLGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILN 99
Query: 276 LDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRII 160
L C +EY E+A ++ ++ + R++
Sbjct: 100 LPNGLSKGC--AIIEYSTAEEARTAIKTLSNQKFMGRLV 136
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 36.3 bits (80), Expect = 0.003
Identities = 19/70 (27%), Positives = 38/70 (54%)
Frame = -1
Query: 339 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRII 160
TEEQ+ +L++ G ++ + + LD+ G+ +EY E A+ + N + LD+++
Sbjct: 22 TEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEKL- 80
Query: 159 RCDWDAGFIE 130
+ D F+E
Sbjct: 81 --EVDFAFLE 88
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 35.9 bits (79), Expect = 0.004
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = -1
Query: 489 YKMKRSYDSMNSSIEISS--YRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYEL 316
Y + R S S++ ++ + D+H + +++GNL+F EE ++
Sbjct: 230 YIVFRDSSSARSALSLNGTMFMDRHLRVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRY 289
Query: 315 YSRCGDIRRVIMGLDKYKKTPCGFCFVEY 229
+ CG I V + D GF ++++
Sbjct: 290 FGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 35.5 bits (78), Expect = 0.006
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = -1
Query: 390 LLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDA 211
+L + +YI NL E+Q+ EL GD+ + + + GFCF E+ DA
Sbjct: 305 VLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDA 364
Query: 210 ENCMRYING 184
E + ++G
Sbjct: 365 EVAISGLDG 373
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 35.5 bits (78), Expect = 0.006
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = -1
Query: 369 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 190
L + N+ F T+E + ++ GDI V + D ++ GF +++Y A N + +
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSK-GFGYIQYRNPISARNALEKM 400
Query: 189 NGTRLDDRIIR 157
NG L R +R
Sbjct: 401 NGFDLAGRNMR 411
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 35.5 bits (78), Expect = 0.006
Identities = 20/99 (20%), Positives = 47/99 (47%)
Frame = -1
Query: 450 IEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLD 271
+++ ++ K SE + L K LY+G L E+Q+ +S+ G + R+ M +
Sbjct: 80 MDLGEDAEKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRN 139
Query: 270 KYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRC 154
+ + + F+E+ + + A ++ L ++++C
Sbjct: 140 RKTGSSKHYAFIEFESLDVANVVAETMHNYLLYGKLLQC 178
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 35.5 bits (78), Expect = 0.006
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Frame = -1
Query: 513 IIEK*EQVYKMKRSYDSMNSSIE-------ISSYRDQHFKGSRSEQEKLLKASSTLYIGN 355
I +K YK KR+ NSS + + +D H + + ++ + + + + N
Sbjct: 32 ISKKSRLTYKFKRASKEHNSSPDDGPWQHDLDQEQDAHPRTTHLQKRQHSENRFGVRVEN 91
Query: 354 LSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 175
L + E+ + L+ IR VIM D+ ++ G C V + +DAE+ + + T L
Sbjct: 92 LHYQVLEKDVLSLFENFHPIR-VIMNYDRAGRSE-GSCDVYFETSQDAEDAQKTLQSTNL 149
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.3 bits (75), Expect = 0.014
Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = -1
Query: 417 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRV-IMGLDKYK----KTP 253
K S + K ++Y+GNL ++EL+ G+ + ++ K K K+P
Sbjct: 6 KLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSP 65
Query: 252 CGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 148
F F+ + + A+N + +NG+ ++ ++
Sbjct: 66 TLFAFITFENKCSADNAIASLNGSSFQGNTLKVEY 100
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 34.3 bits (75), Expect = 0.014
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = -1
Query: 375 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 196
+T+Y+GNLS E+++ +S+ RR+ + K CFVE+ A M
Sbjct: 602 NTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKI----KGNSPMCFVEFEEVCHAAKAME 657
Query: 195 YINGTRLDDRI 163
+ G LDD+I
Sbjct: 658 KMQGAALDDKI 668
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 33.9 bits (74), Expect = 0.018
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Frame = -1
Query: 480 KRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCG 301
KR Y+S ++ S R++ K SE + +YI L T ++I E++ +CG
Sbjct: 75 KRLYESTSAEGYPSGSRNKKSKSENSEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCG 134
Query: 300 DI-RRVIMGLDKYK------KTPCGFCFVEYYAREDAE 208
I + + G + K TP G + ++ E E
Sbjct: 135 VIAKNIDNGTPRIKIYRTEDGTPKGDALIVFFRSESVE 172
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 33.5 bits (73), Expect = 0.024
Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = -1
Query: 444 ISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKY 265
++ +R + + + AS L++ NL + EL+S+ GD++ G+D
Sbjct: 172 VTGFRSSSLNSNSDDIDIFSHASRYLFVTNLPRIVPYATLLELFSKLGDVK----GIDTS 227
Query: 264 KKTPCGFCFVEYYAREDAENCMRYINGTR-LDDRII 160
+ G C V ++ A + + R +DR++
Sbjct: 228 SLSTDGICIVAFFDIRQAIQAAKSLRSQRFFNDRLL 263
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 33.5 bits (73), Expect = 0.024
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = -1
Query: 408 RSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 229
R EQEK K +++G + TEE+ +++ G + + +DK P GF FV Y
Sbjct: 240 REEQEKTAK----MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295
Query: 228 YAREDAENCM 199
E M
Sbjct: 296 ENESAVEATM 305
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/82 (17%), Positives = 38/82 (46%)
Frame = -1
Query: 474 SYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDI 295
+Y+ S++ S + + + + E + ++IG L++ TT++ + + + + G++
Sbjct: 131 NYNENQSALTGSGAMESN-EDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEV 189
Query: 294 RRVIMGLDKYKKTPCGFCFVEY 229
+ D GF F+ +
Sbjct: 190 LDCTVMRDSTTGRSRGFGFLTF 211
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 30.3 bits (65), Expect = 0.22
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = -1
Query: 375 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 196
+ L++ L+ T +E + ++SR G I + DK + F+E+ +E E
Sbjct: 244 NVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYF 303
Query: 195 YINGTRLDDRIIRCDW 148
+ +DD I D+
Sbjct: 304 KMQNVLIDDSRIHVDF 319
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.9 bits (64), Expect = 0.29
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -1
Query: 378 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGL 274
SST+Y+GN+ ++E+I + +S+ G + + L
Sbjct: 16 SSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRL 50
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 29.9 bits (64), Expect = 0.29
Identities = 14/76 (18%), Positives = 34/76 (44%)
Frame = -1
Query: 375 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 196
+ + + N+ F ++ + + + + G R G F +Y E+A+ ++
Sbjct: 202 TAIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQ 261
Query: 195 YINGTRLDDRIIRCDW 148
+NG ++ R +R +W
Sbjct: 262 TLNGYEINGRRLRVEW 277
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 29.9 bits (64), Expect = 0.29
Identities = 14/76 (18%), Positives = 35/76 (46%)
Frame = -1
Query: 375 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 196
+ + I N+ F +E ++++++ R G F +++ E+A+ ++
Sbjct: 232 TAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQ 291
Query: 195 YINGTRLDDRIIRCDW 148
+NG + R +R +W
Sbjct: 292 VLNGYEITGRRLRVEW 307
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.52
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = -1
Query: 372 TLYI-GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 196
TLY+ G E YE + G + R + + + +T F FVEY DAE+
Sbjct: 8 TLYVTGFRDGMRARELAYE-FEPFGPLIRCDIPIPR-TRTSRPFAFVEYEDSRDAEDAYY 65
Query: 195 YINGTRLD--DRIIRCDW 148
++G RL+ ++R +W
Sbjct: 66 EVHGRRLERGGGVLRVEW 83
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 28.3 bits (60), Expect = 0.90
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -1
Query: 375 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 196
+T+Y+GNL T+EE++ L+S +R+ K CFVE+ A ++
Sbjct: 426 NTIYVGNLPPSTSEEELKVLFSTQVGYKRLCF----RTKGNGPMCFVEFENIPYAMEALK 481
Query: 195 YINGTRLDDRI 163
+ G L I
Sbjct: 482 NLQGVCLSSSI 492
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -1
Query: 369 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAR 220
+++ N+S T EQ+ + G++ + + L+ Y T G C + + R
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKR 145
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -1
Query: 384 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYK--KTPCGFCFVEYYAREDA 211
K S TL++G+L + I +L++ + V + K +T +CFV++ + A
Sbjct: 82 KMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAA 141
Query: 210 ENCMRYINGTRL 175
E + N T +
Sbjct: 142 ERALMKYNNTMI 153
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = -1
Query: 372 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 193
T ++GNLSF TE + + + + + + +D + GF +VE + D +
Sbjct: 95 TAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVE-FETADTLSAALA 151
Query: 192 INGTRLDDRIIR 157
++G L R +R
Sbjct: 152 LSGEDLMGRPVR 163
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 3.6
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -1
Query: 396 EKLLKASSTLY-IGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAR 220
EK LK S + +G+ FY T + ++R +RR + K C FC +AR
Sbjct: 9 EKPLKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFC-NRAFAR 67
Query: 219 EDAEN 205
D N
Sbjct: 68 SDVLN 72
>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 378 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRV 286
S+ + + N+S TE+QI + +S CG + +
Sbjct: 2 SNQVIVTNISPEVTEKQISDFFSFCGKVSNI 32
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 282 LLLFLYRRIVNTVHKFALLLCKMKGFQCKALTKLLVIFLVRF 407
L+LF++R+ V + F L + + C+ KL++ ++RF
Sbjct: 791 LILFIFRKCVIGIKSFEKLQSYVFTYYCERYPKLILKRVLRF 832
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 403 RTRKITKSFVNALHWKPFILH 341
+ +K+T +VN+L WK +I H
Sbjct: 416 KNKKVTFVWVNSLQWKTWISH 436
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 15 WVYFLCYYFSITATPTVIVSS 77
W++ +C Y+ I T T I+S+
Sbjct: 236 WMHLICSYYGIYTTSTQILSN 256
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,889
Number of Sequences: 5004
Number of extensions: 41908
Number of successful extensions: 157
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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