Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A12
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   0.78 
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   5.5  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    23   7.3  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    23   7.3  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    23   7.3  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    23   7.3  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    23   9.6  
SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6 |Sc...    23   9.6  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    23   9.6  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 0.78
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
 Frame = -2

Query: 189 PNSLSHPAGVERGL----PSPALCPAGTMKPWRLFINLFRMKLKNSCYAR 52
           P+S   P G  RG     P P LC  G   P    +  F +  K S +AR
Sbjct: 275 PHSCGDPCGKTRGQDCEHPCPLLCHPGPCPPCTATVEKFCLCGKESIHAR 324


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 280  VSKSLKELTQPKMYKFTILFL-VLAC 206
            +S+ L+    P +Y+F ILF+ V++C
Sbjct: 1063 ISRCLQITRLPTLYRFIILFMGVISC 1088


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 255 VSSLSDFETATDQF 296
           VS+LSDFE   DQF
Sbjct: 298 VSNLSDFEDCFDQF 311


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 38  VGLRLLA*QEFFSFILNKFINR--RQGFIVPA 127
           VG+ +L  + +F F  N+F+N+  R+  + PA
Sbjct: 681 VGICVLCYKIYFKFFRNRFMNQGEREPLLAPA 712


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 151 AAIAGTVSCRNDEALASIYKLIQNEAEK 68
           A + G + C+N E ++ +Y+L   E  K
Sbjct: 334 AFLYGPLDCKNPEDISLLYQLATGEDSK 361


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 299 NELISSCFEVTQRTNSAKNVQIHDSIPC 216
           +EL+S  F   Q+ N A +V IH  + C
Sbjct: 788 DELVSVFFAGLQKWNEACHVSIHSLMLC 815


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 130 SCRNDEALASIYKLIQNEAEKLLLCQK 50
           S  NDEA+  + +L++ + ++ L CQ+
Sbjct: 295 SLANDEAIDLLNRLLRYDHQERLTCQE 321


>SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 99  IDAKASSFLQDTVPAMAALFPPQLDVKVSWASAIMKQAKTRNRIVNLYIFG*VSSL 266
           +  + S F   ++ A  ++ P      V+   AI    KTR R  N  I+G +  L
Sbjct: 43  VQNEPSKFSYSSIEAPPSVLPQPKYCDVTGLLAIYTDPKTRLRYHNKEIYGLIREL 98


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -1

Query: 118 DEALASIYKLIQNEAEKLLLCQK 50
           D+A+  +Y++++ E   L +C+K
Sbjct: 377 DQAIRDLYQILEVEFHPLSICKK 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,280,245
Number of Sequences: 5004
Number of extensions: 24948
Number of successful extensions: 60
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)