Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A12
         (301 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.1  
SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)              26   6.5  
SB_52257| Best HMM Match : zf-CCHC (HMM E-Value=0.26)                  25   8.6  
SB_39225| Best HMM Match : NIF (HMM E-Value=0)                         25   8.6  
SB_28422| Best HMM Match : TerC (HMM E-Value=4)                        25   8.6  
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)              25   8.6  

>SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 230 DSIPCFGLLHNGRSPTHFHIQLG-WKEGCHRRHCVLQER 117
           D+  CF    N  S  HFH+ +    +GC+ +HC+  ++
Sbjct: 109 DAAECF---ENILSRMHFHLAMNEHDDGCNAKHCISHQK 144


>SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)
          Length = 1120

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 183 SLSHPAGVERGLPSPALCPAGTMKPWRLFINLFRMKLKNSCYARSL-KPTP 34
           SL H A + R L   A  P GT KP  LFI     K   +C    L +P P
Sbjct: 597 SLPHGARL-RLLQQWARVPPGTAKPQPLFIRAVSKKKHETCKQPFLVRPNP 646


>SB_52257| Best HMM Match : zf-CCHC (HMM E-Value=0.26)
          Length = 208

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/61 (26%), Positives = 23/61 (37%)
 Frame = -3

Query: 299 NELISSCFEVTQRTNSAKNVQIHDSIPCFGLLHNGRSPTHFHIQLGWKEGCHRRHCVLQE 120
           N  +  C E   +T+  K   +     C     N  S THF     W +GC +  C L  
Sbjct: 68  NHRVEDCREFKAKTSKEKLDFVRQKKFC----ENCFSSTHFAGGCRWPKGCKKPDCQLTR 123

Query: 119 R 117
           +
Sbjct: 124 K 124


>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
          Length = 1772

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 178  FTSSWGGKRAAIAGTVSCRNDEAL 107
            + SS GG +A  + T +C NDE++
Sbjct: 1299 YKSSMGGGKAVKSDTRTCENDESV 1322


>SB_28422| Best HMM Match : TerC (HMM E-Value=4)
          Length = 465

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 182 HFHIQLGWKEGCHRRHCVLQER 117
           H H  L W EG  R  C+L +R
Sbjct: 300 HAHWALTWMEGPKRSRCMLTQR 321


>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 291

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 175 TSSWGGKRAAIAGTVSCRNDEALASIYKLIQ-NEAEKLLLC 56
           T +WG +R A    VSC+ +E ++++ + +   E    ++C
Sbjct: 8   TENWGEQREARFYAVSCQGNEDISTMLRTLSLKELNPHIIC 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,691,515
Number of Sequences: 59808
Number of extensions: 194128
Number of successful extensions: 486
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)