Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_A12
(301 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02475.1 68414.m00198 expressed protein 30 0.33
At1g04550.2 68414.m00448 auxin-responsive protein / indoleacetic... 29 0.76
At5g38400.1 68418.m04642 hypothetical protein 27 3.1
At5g48060.1 68418.m05938 C2 domain-containing protein contains I... 26 4.1
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 26 5.4
At1g28280.1 68414.m03471 VQ motif-containing protein contains PF... 26 5.4
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ... 25 7.1
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 25 7.1
At1g51980.1 68414.m05863 mitochondrial processing peptidase alph... 25 7.1
At1g05940.1 68414.m00623 amino acid permease family protein low ... 25 7.1
At5g48290.1 68418.m05964 heavy-metal-associated domain-containin... 25 9.4
At5g04770.1 68418.m00492 amino acid permease family protein simi... 25 9.4
At4g28880.1 68417.m04127 casein kinase, putative similar to simi... 25 9.4
At1g19610.1 68414.m02443 plant defensin-fusion protein, putative... 25 9.4
>At1g02475.1 68414.m00198 expressed protein
Length = 219
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 108 WRLFINLFRMKLKNSCYARSLKPTPPKRKH 19
W L N F +K S AR+L+PTP ++ H
Sbjct: 124 WSLKYNAFGQDIKYSWLARNLQPTPNQKIH 153
>At1g04550.2 68414.m00448 auxin-responsive protein / indoleacetic
acid-induced protein 12 (IAA12) identical to SP|Q38830
Auxin-responsive protein IAA12 (Indoleacetic
acid-induced protein 12) {Arabidopsis thaliana}
Length = 239
Score = 28.7 bits (61), Expect = 0.76
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 111 PWRLFIN-LFRMKLKNSCYARSLKPTPPKRKHRQ 13
PWR+FIN + R+++ + A L P ++K RQ
Sbjct: 201 PWRMFINSVKRLRIMGTSEASGLAPRRQEQKDRQ 234
>At5g38400.1 68418.m04642 hypothetical protein
Length = 151
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 78 KLKNSCYARSLKPTPPKRK 22
K + + Y S+KP PPKRK
Sbjct: 42 KARMNVYKESMKPLPPKRK 60
>At5g48060.1 68418.m05938 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1036
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 159 PPQLDVKVSWASAI 200
PP +D+K+SWA A+
Sbjct: 903 PPHMDMKLSWAEAV 916
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 244 MYKFTILFLVLACFIMA 194
+Y FT LFL+L CF+ A
Sbjct: 885 IYPFTSLFLILYCFLPA 901
>At1g28280.1 68414.m03471 VQ motif-containing protein contains
PF05678: VQ motif
Length = 247
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 287 SSCFEVTQRTNSAKNVQIHDSIPCFGLLHNGRSP 186
+S F + +R NS KN++I+ P F +++ SP
Sbjct: 123 ASGFRLYERRNSMKNLKINPLNPVFNPVNSAFSP 156
>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
family protein contains Pfam domain PF04153: NOT2 / NOT3
/ NOT5 family
Length = 843
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 133 VSCRNDEALASIYKLIQNEAEKLLLCQK 50
VS +++L KLI+ E E+ +C+K
Sbjct: 76 VSASYEQSLVDARKLIEKEMERFKICEK 103
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +2
Query: 122 PAGHSAGDGSPLSTPAGCESELGFGHYEAS 211
PAG D SPLS C S LG G AS
Sbjct: 908 PAGKLPLDISPLSKGPSCVSPLGVGPVIAS 937
>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
subunit, putative similar to mitochondrial processing
peptidase alpha subunit, mitochondrial precursor,
Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
[Potato] SWISS-PROT:P29677
Length = 503
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 110 GFIVPAGHSAGDGSPLSTP 166
GF++ A HSAG PL++P
Sbjct: 211 GFLLEAIHSAGYSGPLASP 229
>At1g05940.1 68414.m00623 amino acid permease family protein low
similarity to SP|P30823 High-affinity cationic amino
acid transporter-1 (CAT-1) {Rattus norvegicus}; contains
Pfam profile PF00324: Amino acid permease
Length = 569
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 34 WCRLKASGIAGVFQLHS 84
WC + A +AG+F +HS
Sbjct: 387 WCGIVAGVLAGIFNVHS 403
>At5g48290.1 68418.m05964 heavy-metal-associated domain-containing
protein strong similarity to farnesylated proteins ATFP4
[GI:4097549] and ATFP5 [GI:4097551]; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 181
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 107 QGFIVPAGHSAGDGSPLSTPAGC 175
QG+ VP+ GDG P S P C
Sbjct: 136 QGYGVPSTFPQGDGVPSSFPYPC 158
>At5g04770.1 68418.m00492 amino acid permease family protein similar
to cationic amino acid transporter-1 [Rattus norvegicus]
GI:1589917; contains Pfam profile PF00324: Amino acid
permease
Length = 583
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 113 FIVPAGHSAGDGSPLSTPAGCESELGFGHYEAS 211
F++ G GD LS+PA E GF + A+
Sbjct: 229 FVIVMGFIKGDSKNLSSPANPEHPSGFFPFGAA 261
>At4g28880.1 68417.m04127 casein kinase, putative similar to similar
to casein kinase I, delta isoform [Arabidopsis thaliana]
SWISS-PROT:P42158; contains protein kinase domain,
Pfam:PF00069
Length = 415
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 174 HPAGVERGLPSPALCPAGTMK 112
HP +PS +L PAGT K
Sbjct: 366 HPVHKNMNMPSTSLSPAGTSK 386
>At1g19610.1 68414.m02443 plant defensin-fusion protein, putative
(PDF1.4) plant defensin protein family member, personal
communication, Bart Thomma
(Bart.Thomma@agr.kuleuven.ac.be); similar to
SWISS-PROT:P30224, Cysteine-rich antifungal protein 1
precursor (AFP1)[Arabidopsis thaliana]
Length = 78
Score = 25.0 bits (52), Expect = 9.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 118 RSCRTQCRRWQPSFH 162
R C +QC+RW+ + H
Sbjct: 46 RGCDSQCKRWERASH 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,811,268
Number of Sequences: 28952
Number of extensions: 139252
Number of successful extensions: 388
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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