Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_A10
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 32 0.32
SB_12663| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5) 30 1.3
SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_54241| Best HMM Match : YaeQ (HMM E-Value=8.4) 30 1.7
SB_46728| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_38556| Best HMM Match : RVP (HMM E-Value=1.4) 30 1.7
SB_32503| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 30 1.7
SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_48606| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_44047| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_43706| Best HMM Match : RVP (HMM E-Value=1.4) 30 1.7
SB_27011| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_25749| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_22574| Best HMM Match : RVP (HMM E-Value=1.4) 30 1.7
SB_3491| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_51489| Best HMM Match : Rhabdo_NV (HMM E-Value=8.6) 29 2.3
SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 29 2.3
SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_14902| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_9537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09) 27 9.1
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 27 9.1
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 27 9.1
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 477 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPAN 355
N P +Q N P +Q N P +Q N + + P +QP N
Sbjct: 214 NQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTN 254
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 477 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPAN 355
N P +Q N P +Q N P +Q N + + P +QP N
Sbjct: 218 NQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTN 258
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = -2
Query: 477 NAPAHQDWNAPAHQDWNAPAHQS------WNGAPSWQSGAPAHQPANIRLANDGSGILDT 316
N P +Q N P +Q N P +Q+ N + + P +QPAN++ + S D
Sbjct: 238 NQPTNQPTNQPTNQPTNQPTNQTNQPTNQPNQPTNLPTDQPTNQPANLQTTHAPSQPADQ 297
Query: 315 P 313
P
Sbjct: 298 P 298
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -2
Query: 477 NAPAHQDW---NAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPAN 355
N P +Q + N P +Q N P +Q N + + P +QP N
Sbjct: 203 NLPPNQPYKQTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTN 246
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -1
Query: 520 SCPTTMERPSSPGLECPR--PPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*HQT 347
S P P + L PR P R++SP L +PI E S L +R P++ HQ
Sbjct: 2309 STPVPKSSPINSPLTSPRDSPVPFSRAKSPQLSVDFAPITESSVKLNVRLPQTSDSSHQN 2368
Query: 346 S 344
+
Sbjct: 2369 A 2369
>SB_12663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -1
Query: 469 RPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR 359
R PG++ +RSPG + +RSP + + L + RSP R
Sbjct: 3 RSPGIQVARSPGRQVARSPGHQVARSLGRQVARSPGR 39
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 490 SPGLECPRPPGLERSRSPGLECSRS 416
SPG++ R PG + +RSPG + +RS
Sbjct: 4 SPGIQVARSPGRQVARSPGHQVARS 28
>SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = +2
Query: 356 LAGW*AGAPDCQEGAPFHDW*AGAFQSW*AGAFQSWWAGAFQSW*AGAF 502
L+ W G W G F SW G SW+ G W G F
Sbjct: 140 LSSWFYGELSSSLSGELSSWFYGEFSSWFYGEISSWFYGELSFWFYGEF 188
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = +2
Query: 356 LAGW*AGAPDCQEGAPFHDW*AGAFQSW*AGAFQSWWAGAFQSW*AGAF 502
L+ W G W G F SW G SW+ G W G F
Sbjct: 386 LSSWFYGELSSSLSGELSSWFYGEFSSWFYGEISSWFYGELSFWFYGEF 434
Score = 31.5 bits (68), Expect = 0.56
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = +2
Query: 356 LAGW*AGAPDCQEGAPFHDW*AGAFQSW*AGAFQSWWAGAFQSW*AGAF 502
L+ W G W G F SW G SW+ G W G F
Sbjct: 44 LSSWFYGELSSSMTGELSSWFYGEFSSWFYGEISSWFYGELSFWFYGEF 92
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 413 W*AGAFQSW*AGAFQSWWAGAFQSW 487
W G SW +G SW++G SW
Sbjct: 533 WFYGVLSSWFSGELSSWFSGELSSW 557
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 404 FHDW*AGAFQSW*AGAFQSWWAGAFQSW 487
F W G SW G W+ G F SW
Sbjct: 68 FSSWFYGEISSWFYGELSFWFYGEFSSW 95
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 404 FHDW*AGAFQSW*AGAFQSWWAGAFQSW 487
F W G SW G W+ G F SW
Sbjct: 164 FSSWFYGEISSWFYGELSFWFYGEFSSW 191
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 404 FHDW*AGAFQSW*AGAFQSWWAGAFQSW 487
F W G SW G W+ G F SW
Sbjct: 410 FSSWFYGEISSWFYGELSFWFYGEFSSW 437
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 419 AGAFQSW*AGAFQSWWAGAFQSW*AG 496
+G SW G SW++G SW +G
Sbjct: 527 SGELSSWFYGVLSSWFSGELSSWFSG 552
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/43 (27%), Positives = 14/43 (32%)
Frame = +2
Query: 359 AGW*AGAPDCQEGAPFHDW*AGAFQSW*AGAFQSWWAGAFQSW 487
+ W G W G SW G SW+ G SW
Sbjct: 93 SSWFYGELSSSLSGELSSWLYGELSSWFYGELSSWFYGELSSW 135
>SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5)
Length = 348
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -1
Query: 523 CSCPTTMERPSSPGLECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPA 362
C+ +++E P EC P E + P EC+ P E + +L++ C P+
Sbjct: 157 CALISSLECAFIPSSECALIPCSECALIPSSECALIPSSESALILSLECALIPS 210
>SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/51 (37%), Positives = 21/51 (41%)
Frame = +2
Query: 344 ASLMLAGW*AGAPDCQEGAPFHDW*AGAFQSW*AGAFQSWWAGAFQSW*AG 496
A++ LA W G A DW AG W AG W AG W AG
Sbjct: 211 ATVELAEWGLGV------ARLTDWMAGWLAGWLAGWLAGWLAGWLAGWLAG 255
>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1505
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 320 THLRSPPRVLLIWPPTRKPLTLPQLTP 240
T LR+PPR +WP +TLP TP
Sbjct: 431 TVLRAPPRNATVWPGEFLEITLPDDTP 457
>SB_54241| Best HMM Match : YaeQ (HMM E-Value=8.4)
Length = 182
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 320 THLRSPPRVLLIWPPTRKPLTLPQLTP 240
T LR+PPR +WP +TLP TP
Sbjct: 139 TVLRAPPRNATVWPGEFLEITLPDDTP 165
>SB_46728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 320 THLRSPPRVLLIWPPTRKPLTLPQLTP 240
T LR+PPR +WP +TLP TP
Sbjct: 41 TVLRAPPRNATVWPGEFLEITLPDDTP 67
>SB_38556| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 230
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 320 THLRSPPRVLLIWPPTRKPLTLPQLTP 240
T LR+PPR +WP +TLP TP
Sbjct: 187 TVLRAPPRNATVWPGEFLEITLPDDTP 213
>SB_32503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 320 THLRSPPRVLLIWPPTRKPLTLPQLTP 240
T LR+PPR +WP +TLP TP
Sbjct: 181 TVLRAPPRNATVWPGEFLEITLPDDTP 207
>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 1283
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 320 THLRSPPRVLLIWPPTRKPLTLPQLTP 240
T LR+PPR +WP +TLP TP
Sbjct: 443 TVLRAPPRNATVWPGEFLEITLPDDTP 469
>SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 320 THLRSPPRVLLIWPPTRKPLTLPQLTP 240
T LR+PPR +WP +TLP TP
Sbjct: 108 TVLRAPPRNATVWPGEFLEITLPDDTP 134
>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1586
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 320 THLRSPPRVLLIWPPTRKPLTLPQLTP 240
T LR+PPR +WP +TLP TP
Sbjct: 489 TVLRAPPRNATVWPGEFLEITLPDDTP 515
>SB_48606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 320 THLRSPPRVLLIWPPTRKPLTLPQLTP 240
T LR+PPR +WP +TLP TP
Sbjct: 120 TVLRAPPRNATVWPGEFLEITLPDDTP 146
>SB_44047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 320 THLRSPPRVLLIWPPTRKPLTLPQLTP 240
T LR+PPR +WP +TLP TP
Sbjct: 41 TVLRAPPRNATVWPGEFLEITLPDDTP 67
>SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 577
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 320 THLRSPPRVLLIWPPTRKPLTLPQLTP 240
T LR+PPR +WP +TLP TP
Sbjct: 442 TVLRAPPRNATVWPGEFLEITLPDDTP 468
>SB_27011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 320 THLRSPPRVLLIWPPTRKPLTLPQLTP 240
T LR+PPR +WP +TLP TP
Sbjct: 23 TVLRAPPRNATVWPGEFLEITLPDDTP 49
>SB_25749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 320 THLRSPPRVLLIWPPTRKPLTLPQLTP 240
T LR+PPR +WP +TLP TP
Sbjct: 65 TVLRAPPRNATVWPGEFLEITLPDDTP 91
>SB_22574| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 382
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 320 THLRSPPRVLLIWPPTRKPLTLPQLTP 240
T LR+PPR +WP +TLP TP
Sbjct: 339 TVLRAPPRNATVWPGEFLEITLPDDTP 365
>SB_3491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 320 THLRSPPRVLLIWPPTRKPLTLPQLTP 240
T LR+PPR +WP +TLP TP
Sbjct: 65 TVLRAPPRNATVWPGEFLEITLPDDTP 91
>SB_51489| Best HMM Match : Rhabdo_NV (HMM E-Value=8.6)
Length = 201
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 302 PRVLLIWPPTRKPLTLPQLTPLSNTGELI 216
P+ LLIW PL P+L L ++G+L+
Sbjct: 10 PQTLLIWYGNTAPLRTPELKDLLDSGDLV 38
>SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 1212
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 320 THLRSPPRVLLIWPPTRKPLTLPQLTP 240
T LR+PPR +WP +TLP TP
Sbjct: 452 TVLRAPPRNATVWPGGFLEITLPDDTP 478
>SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 514 PTTMERPSSPGLECPRPPGLERSRSP-GLECSRSP 413
PTT E P P + P+PP + S+ P GL R P
Sbjct: 452 PTTTETPIVPTVPGPQPPIIVGSKGPDGLRGYRGP 486
>SB_14902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 5 VGXRFLKVSKSHSICQKKSLTH*HFETKSQ*EIEGKKTP 121
+ R K S SICQK F+ SQ + EGKK P
Sbjct: 66 IADRSEKSQTSSSICQKWKSVKCSFQRVSQEDSEGKKLP 104
>SB_9537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -1
Query: 511 TTMERPSSPGLECPRPPGLERSRSPGLECSRSP 413
+T P+ PG RP ER R LEC P
Sbjct: 50 STWTIPTDPGYNTRRPSSAERYRQSPLECRPKP 82
>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 311 RSPPRVLLIWPPTRKPLTLPQLTPLSNTGELIRLFFPFRAPQS 183
R P +V+++ R PL LT N G +RL+ + P +
Sbjct: 239 RDPVKVIMVVGAGRGPLVRASLTAAENAGRRVRLYAVEKNPNA 281
>SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 612
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 302 PRVLLIWPPTRKPLTLPQLTPLSNTGELIRLFFPFRAPQS 183
P LL P +P L +P++ + LFFP+ PQ+
Sbjct: 251 PSNLLPSLPLLRPFKLATFSPITTALQACSLFFPYYGPQT 290
>SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09)
Length = 712
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/53 (26%), Positives = 18/53 (33%)
Frame = -2
Query: 471 PAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPANIRLANDGSGILDTP 313
P H + P H + P H + P P H P + L LD P
Sbjct: 117 PPHSALDKPPHSALDKPLHSVLDKPPHSALDKPPHLPPTLTLDKPPHSALDKP 169
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = -2
Query: 471 PAHQDWNAPAHQDWNAPAHQSWN---GAPSWQSGAPAHQP 361
P ++ P + W A HQ + G P ++ G P H+P
Sbjct: 423 PPYEQRRPPHEKSWQAFEHQRISHEHGGPLFEPGRPPHEP 462
>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 27.5 bits (58), Expect = 9.1
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -2
Query: 480 WNAPAHQDWNAPAHQDWNAPAHQSWN 403
WN + WN + + WN + ++WN
Sbjct: 596 WNETSTGTWNETSSKAWNENSSKAWN 621
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = -1
Query: 517 CPTTMERPSSPGLECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*HQTSQR 338
CP + SSP ECP + +C + P + + L P P + HQ Q+
Sbjct: 1811 CPVMCCKNSSPATECPTICASKCISKCPEKCCKQPEPQPALLSTTPTPPPPPQPHQQQQQ 1870
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = -2
Query: 471 PAHQDWNAPAHQDWNAPAHQSWN---GAPSWQSGAPAHQP 361
P ++ P + W A HQ + G P ++ G P H+P
Sbjct: 189 PPYEQRRPPHEKSWQAFEHQRISHEHGGPLFEPGRPPHEP 228
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,308,581
Number of Sequences: 59808
Number of extensions: 293587
Number of successful extensions: 1048
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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