Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_A10
(616 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK128837-1|BAC87637.1| 286|Homo sapiens protein ( Homo sapiens ... 33 1.1
AY029347-1|AAK38155.1| 1007|Homo sapiens serine/threonine-protei... 31 3.2
AL138831-3|CAI20480.1| 1007|Homo sapiens PRP4 pre-mRNA processin... 31 3.2
AL033383-1|CAI42121.1| 1007|Homo sapiens PRP4 pre-mRNA processin... 31 3.2
AF283465-1|AAM19101.1| 1007|Homo sapiens PRP4 kinase protein. 31 3.2
AB011108-1|BAA25462.1| 1028|Homo sapiens KIAA0536 protein protein. 31 3.2
BC039260-1|AAH39260.1| 765|Homo sapiens RBM12B protein protein. 31 4.3
X70040-1|CAA49634.1| 1400|Homo sapiens tyrosine kinase protein. 30 5.6
BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetit... 30 5.6
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 30 5.6
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 30 5.6
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 30 5.6
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 30 5.6
X90568-1|CAA62188.1|26926|Homo sapiens titin protein. 29 9.9
X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein. 29 9.9
X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for ... 29 9.9
X03325-1|CAA27044.1| 372|Homo sapiens apolipoprotein B fragment... 29 9.9
M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipopr... 29 9.9
M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein. 29 9.9
M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein. 29 9.9
M12413-1|AAA51742.1| 836|Homo sapiens APOB protein. 29 9.9
M10374-1|AAA51750.1| 1455|Homo sapiens APOB protein. 29 9.9
J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipopr... 29 9.9
BC050032-1|AAH50032.1| 681|Homo sapiens TXNRD3 protein protein. 29 9.9
AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (inclu... 29 9.9
AJ277892-5|CAD12459.1| 2154|Homo sapiens Titin Novex-1 Isoform p... 29 9.9
AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein. 29 9.9
AJ277892-1|CAD12455.1|26926|Homo sapiens N2B-Titin Isoform protein. 29 9.9
AF058332-2|AAD22604.1| 926|Homo sapiens myocardium-specific tit... 29 9.9
AF058332-1|AAD22603.1| 1019|Homo sapiens titin protein. 29 9.9
AC115619-1|AAX93246.1| 633|Homo sapiens unknown protein. 29 9.9
AB208846-1|BAD92083.1| 1615|Homo sapiens Apolipoprotein B varia... 29 9.9
>AK128837-1|BAC87637.1| 286|Homo sapiens protein ( Homo sapiens
cDNA FLJ46366 fis, clone TESTI4051388. ).
Length = 286
Score = 32.7 bits (71), Expect = 1.1
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -3
Query: 332 PASSTHLRSPPRVLLIWPPTRKPLT-LPQLTPLSNTGELIRLFFPFRAPQSE-PARN*RS 159
P ++ R+PPR L PPTR P T +P P + T P R P +E PAR +
Sbjct: 58 PPRASPRRTPPRASLTRPPTRAPPTRMPPTAPPTRTPPTAS---PARTPPTESPARTPPT 114
Query: 158 VSRER 144
S R
Sbjct: 115 ASPAR 119
>AY029347-1|AAK38155.1| 1007|Homo sapiens serine/threonine-protein
kinase protein.
Length = 1007
Score = 31.1 bits (67), Expect = 3.2
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 463 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRR 299
P RSRSP SRSP+ RS R PR R ++ R R R GRRR
Sbjct: 438 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 493
>AL138831-3|CAI20480.1| 1007|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog B (yeast) protein.
Length = 1007
Score = 31.1 bits (67), Expect = 3.2
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 463 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRR 299
P RSRSP SRSP+ RS R PR R ++ R R R GRRR
Sbjct: 438 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 493
>AL033383-1|CAI42121.1| 1007|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog B (yeast) protein.
Length = 1007
Score = 31.1 bits (67), Expect = 3.2
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 463 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRR 299
P RSRSP SRSP+ RS R PR R ++ R R R GRRR
Sbjct: 438 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 493
>AF283465-1|AAM19101.1| 1007|Homo sapiens PRP4 kinase protein.
Length = 1007
Score = 31.1 bits (67), Expect = 3.2
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 463 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRR 299
P RSRSP SRSP+ RS R PR R ++ R R R GRRR
Sbjct: 438 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 493
>AB011108-1|BAA25462.1| 1028|Homo sapiens KIAA0536 protein protein.
Length = 1028
Score = 31.1 bits (67), Expect = 3.2
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 463 PGLERSRSPGLECSRSPI-MERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRR 299
P RSRSP SRSP+ RS R PR R ++ R R R GRRR
Sbjct: 459 PTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRR 514
>BC039260-1|AAH39260.1| 765|Homo sapiens RBM12B protein protein.
Length = 765
Score = 30.7 bits (66), Expect = 4.3
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -2
Query: 483 DWNAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSG 379
D+ P D+ P +DW P + + G P SG
Sbjct: 602 DFRCPPEDDFRHPREEDWRRPPPEHFGGLPQSTSG 636
>X70040-1|CAA49634.1| 1400|Homo sapiens tyrosine kinase protein.
Length = 1400
Score = 30.3 bits (65), Expect = 5.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 475 CPRPPGLERSRSPGLECSRSPIMERSS 395
CP PPGLE + SP C P++ SS
Sbjct: 407 CPNPPGLE-ALSPNTSCRHFPLLVSSS 432
>BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.3 bits (65), Expect = 5.6
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = -1
Query: 529 VRCSCPTTMERPSSPG-LECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*H 353
V+ P+ E S+ L+ P+P + + P E + E+ PRS +R
Sbjct: 228 VKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTQ----PRSRSRSK 283
Query: 352 QTSQRWFRHPRHT*GRRRACCSFGRPRASRSLCPSSRPS 236
S+ R P HT RRR R R SRS P RPS
Sbjct: 284 SRSRTRSRSPSHTRPRRR-----HRSR-SRSYSPRRRPS 316
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.3 bits (65), Expect = 5.6
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = -1
Query: 529 VRCSCPTTMERPSSPG-LECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*H 353
V+ P+ E S+ L+ P+P + + P E + E+ PRS +R
Sbjct: 228 VKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTR----PRSRSRSK 283
Query: 352 QTSQRWFRHPRHT*GRRRACCSFGRPRASRSLCPSSRPS 236
S+ R P HT RRR R R SRS P RPS
Sbjct: 284 SRSRTRSRSPSHTRPRRR-----HRSR-SRSYSPRRRPS 316
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 30.3 bits (65), Expect = 5.6
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Frame = -1
Query: 529 VRCSCPTTMERPSSPG-LECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*H 353
V+ P+ E S+ L+ P+P + + P E + E+ PRS +R
Sbjct: 228 VKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTR----PRSRSRSK 283
Query: 352 QTSQRWFRHPRHT*GRRRACCSFGRPRASRSLCPSSRPS 236
S+ R P HT RRR R R+ R P RPS
Sbjct: 284 SRSRTRSRSPSHTRPRRR-----HRSRSRRRPSPRRRPS 317
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.3 bits (65), Expect = 5.6
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = -1
Query: 529 VRCSCPTTMERPSSPG-LECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*H 353
V+ P+ E S+ L+ P+P + + P E + E+ PRS +R
Sbjct: 228 VKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTR----PRSRSRSK 283
Query: 352 QTSQRWFRHPRHT*GRRRACCSFGRPRASRSLCPSSRPS 236
S+ R P HT RRR R R SRS P RPS
Sbjct: 284 SRSRTRSRSPSHTRPRRR-----HRSR-SRSYSPRRRPS 316
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 30.3 bits (65), Expect = 5.6
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Frame = -1
Query: 529 VRCSCPTTMERPSSPG-LECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*H 353
V+ P+ E S+ L+ P+P + + P E + E+ PRS +R
Sbjct: 228 VKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTR----PRSRSRSK 283
Query: 352 QTSQRWFRHPRHT*GRRRACCSFGRPRASRSLCPSSRPS 236
S+ R P HT RRR R R+ R P RPS
Sbjct: 284 SRSRTRSRSPSHTRPRRR-----HRSRSRRRPSPRRRPS 317
>X90568-1|CAA62188.1|26926|Homo sapiens titin protein.
Length = 26926
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 195 SEREEEAN*FTSVAEGRELGQSERLARGRPNEQHARRRPQVCR 323
S+RE A +GR+L E L G P EQ + Q+CR
Sbjct: 3996 SKREPVAIKKVQEVQGRDLLSKESLLSGIPEEQRLNLKIQICR 4038
>X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein.
Length = 4560
Score = 29.5 bits (63), Expect = 9.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 468 AHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPANIRLANDGSGI 325
AH+D++A +D Q W G +PA ++R D GI
Sbjct: 3947 AHRDFSAEYEEDGKFEGLQEWEGKAHLNIKSPAFTDLHLRYQKDKKGI 3994
>X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for
apolipoprotein B-100. ).
Length = 4563
Score = 29.5 bits (63), Expect = 9.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 468 AHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPANIRLANDGSGI 325
AH+D++A +D Q W G +PA ++R D GI
Sbjct: 3950 AHRDFSAEYEEDGKFEGLQEWEGKAHLNIKSPAFTDLHLRYQKDKKGI 3997
>X03325-1|CAA27044.1| 372|Homo sapiens apolipoprotein B fragment
protein.
Length = 372
Score = 29.5 bits (63), Expect = 9.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 468 AHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPANIRLANDGSGI 325
AH+D++A +D Q W G +PA ++R D GI
Sbjct: 140 AHRDFSAEYEEDGKYEGLQEWEGKAHLNIKSPAFTDLHLRYQKDKKGI 187
>M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 (apoB) gene, exons 22 through 29. ).
Length = 4563
Score = 29.5 bits (63), Expect = 9.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 468 AHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPANIRLANDGSGI 325
AH+D++A +D Q W G +PA ++R D GI
Sbjct: 3950 AHRDFSAEYEEDGKYEGLQEWEGKAHLNIKSPAFTDLHLRYQKDKKGI 3997
>M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein.
Length = 3262
Score = 29.5 bits (63), Expect = 9.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 468 AHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPANIRLANDGSGI 325
AH+D++A +D Q W G +PA ++R D GI
Sbjct: 2649 AHRDFSAEYEEDGKYEGLQEWEGKAHLNIKSPAFTDLHLRYQKDKKGI 2696
>M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein.
Length = 4563
Score = 29.5 bits (63), Expect = 9.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 468 AHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPANIRLANDGSGI 325
AH+D++A +D Q W G +PA ++R D GI
Sbjct: 3950 AHRDFSAEYEEDGKYEGLQEWEGKAHLNIKSPAFTDLHLRYQKDKKGI 3997
>M12413-1|AAA51742.1| 836|Homo sapiens APOB protein.
Length = 836
Score = 29.5 bits (63), Expect = 9.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 468 AHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPANIRLANDGSGI 325
AH+D++A +D Q W G +PA ++R D GI
Sbjct: 223 AHRDFSAEYEEDGKYEGLQEWEGKAHLNIKSPASTDLHLRYQKDKKGI 270
>M10374-1|AAA51750.1| 1455|Homo sapiens APOB protein.
Length = 1455
Score = 29.5 bits (63), Expect = 9.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 468 AHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPANIRLANDGSGI 325
AH+D++A +D Q W G +PA ++R D GI
Sbjct: 842 AHRDFSAEYEEDGKFEGLQEWEGKAHLNIKSPAFTDLHLRYQKDKKGI 889
>J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 mRNA, complete cds. ).
Length = 4563
Score = 29.5 bits (63), Expect = 9.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 468 AHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPANIRLANDGSGI 325
AH+D++A +D Q W G +PA ++R D GI
Sbjct: 3950 AHRDFSAEYEEDGKYEGLQEWEGKAHLNIKSPAFTDLHLRYQKDKKGI 3997
>BC050032-1|AAH50032.1| 681|Homo sapiens TXNRD3 protein protein.
Length = 681
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 529 VRCSCPTTMERPSSPGLECPRPPGLERSRSPGLECSRSPIMERS 398
VR + ++ RPS P + P+PP PG S S +ERS
Sbjct: 2 VRVASEGSVRRPSGP-VPAPQPPAFRFVSRPGRARSESETLERS 44
>AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (including
Ag(x) antigen) protein.
Length = 4563
Score = 29.5 bits (63), Expect = 9.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 468 AHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPANIRLANDGSGI 325
AH+D++A +D Q W G +PA ++R D GI
Sbjct: 3950 AHRDFSAEYEEDGKYEGLQEWEGKAHLNIKSPAFTDLHLRYQKDKKGI 3997
>AJ277892-5|CAD12459.1| 2154|Homo sapiens Titin Novex-1 Isoform
protein.
Length = 2154
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 195 SEREEEAN*FTSVAEGRELGQSERLARGRPNEQHARRRPQVCR 323
S+RE A +GR+L E L G P EQ + Q+CR
Sbjct: 1723 SKREPVAIKKVQEVQGRDLLSKESLLSGIPEEQRLNLKIQICR 1765
>AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein.
Length = 30000
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 195 SEREEEAN*FTSVAEGRELGQSERLARGRPNEQHARRRPQVCR 323
S+RE A +GR+L E L G P EQ + Q+CR
Sbjct: 4042 SKREPVAIKKVQEVQGRDLLSKESLLSGIPEEQRLNLKIQICR 4084
>AJ277892-1|CAD12455.1|26926|Homo sapiens N2B-Titin Isoform protein.
Length = 26926
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 195 SEREEEAN*FTSVAEGRELGQSERLARGRPNEQHARRRPQVCR 323
S+RE A +GR+L E L G P EQ + Q+CR
Sbjct: 3996 SKREPVAIKKVQEVQGRDLLSKESLLSGIPEEQRLNLKIQICR 4038
>AF058332-2|AAD22604.1| 926|Homo sapiens myocardium-specific titin
protein.
Length = 926
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 195 SEREEEAN*FTSVAEGRELGQSERLARGRPNEQHARRRPQVCR 323
S+RE A +GR+L E L G P EQ + Q+CR
Sbjct: 588 SKREPVAIKKVQEVQGRDLLSKESLLSGIPEEQRLNLKIQICR 630
>AF058332-1|AAD22603.1| 1019|Homo sapiens titin protein.
Length = 1019
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 195 SEREEEAN*FTSVAEGRELGQSERLARGRPNEQHARRRPQVCR 323
S+RE A +GR+L E L G P EQ + Q+CR
Sbjct: 588 SKREPVAIKKVQEVQGRDLLSKESLLSGIPEEQRLNLKIQICR 630
>AC115619-1|AAX93246.1| 633|Homo sapiens unknown protein.
Length = 633
Score = 29.5 bits (63), Expect = 9.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 468 AHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPANIRLANDGSGI 325
AH+D++A +D Q W G +PA ++R D GI
Sbjct: 20 AHRDFSAEYEEDGKYEGLQEWEGKAHLNIKSPAFTDLHLRYQKDKKGI 67
>AB208846-1|BAD92083.1| 1615|Homo sapiens Apolipoprotein B variant
protein.
Length = 1615
Score = 29.5 bits (63), Expect = 9.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 468 AHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPANIRLANDGSGI 325
AH+D++A +D Q W G +PA ++R D GI
Sbjct: 1002 AHRDFSAEYEEDGKYEGLQEWEGKAHLNIKSPAFTDLHLRYQKDKKGI 1049
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,252,527
Number of Sequences: 237096
Number of extensions: 1524611
Number of successful extensions: 5998
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 5416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5958
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -