Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A10
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    35   0.049
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    33   0.11 
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi...    30   1.4  
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    28   4.3  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    28   4.3  
At1g51405.1 68414.m05786 myosin-related low similarity to nonmus...    27   7.5  
At5g38570.1 68418.m04664 F-box family protein contains F-box dom...    27   9.9  
At3g10525.1 68416.m01263 expressed protein                             27   9.9  
At1g76970.1 68414.m08962 VHS domain-containing protein / GAT dom...    27   9.9  
At1g55300.1 68414.m06317 TATA-binding protein-associated factor ...    27   9.9  
At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger) fa...    27   9.9  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 34.7 bits (76), Expect = 0.049
 Identities = 24/64 (37%), Positives = 27/64 (42%)
 Frame = -1

Query: 529 VRCSCPTTMERPSSPGLECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*HQ 350
           VR   PT + R S       R P   R RSP    SRSP   RS  +  R P    R HQ
Sbjct: 581 VRRRSPTPVNRRSRRSSSASRSPDRRRRRSPS--SSRSPSRSRSPPVLHRSPSPRGRKHQ 638

Query: 349 TSQR 338
             +R
Sbjct: 639 RERR 642


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 477 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPAN 355
           ++PAH   ++PAH   ++PAH   +      S +PAH P++
Sbjct: 231 HSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSH 271



 Score = 33.1 bits (72), Expect = 0.15
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 477 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPAN 355
           ++PAH   ++PAH   ++PAH   +      S +PAH P++
Sbjct: 223 HSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSH 263



 Score = 33.1 bits (72), Expect = 0.15
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -2

Query: 477 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPANIRLANDGSGILDTP 313
           + P+H   +AP+H   +AP+H   +      + +P+H PA  +  +  S    +P
Sbjct: 235 HTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHSPATPKSPSPSSSPAQSP 289



 Score = 31.5 bits (68), Expect = 0.46
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 477 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPAN 355
           + P+H   + P+H   +AP+H   +      + AP+H PA+
Sbjct: 227 HTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAH 267



 Score = 30.7 bits (66), Expect = 0.80
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 477 NAPAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPA 358
           +AP+H   +AP+H   ++P+H          S +PA  PA
Sbjct: 251 HAPSHSPAHAPSHSPAHSPSHSPATPKSPSPSSSPAQSPA 290



 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 468 AHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQPAN 355
           +H   ++PAH   ++PAH   +      S +PAH P++
Sbjct: 218 SHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSH 255


>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
           to CLC-d chloride channel protein [Arabidopsis thaliana]
           GI:1742959
          Length = 792

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -1

Query: 526 RCS-CPTTMERPSSPGLECPRPPGL 455
           +CS CP ++  P S G+ECPRPPG+
Sbjct: 383 KCSPCPESV--PDS-GIECPRPPGM 404


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 30/87 (34%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = -1

Query: 499 RPSSPGL-ECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*HQTSQRWFRHP 323
           RP+SP     P  P   R RSP      SP   R S +  R P    R     +R    P
Sbjct: 262 RPASPSRGRSPSSPPPRRYRSPP---RGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPP 318

Query: 322 RHT*GRRRACCSFGRPRASRSLCPSSR 242
           R +  RRR+     RP  SRS   S R
Sbjct: 319 RRSPIRRRSRSPIRRPGRSRSSSISPR 345


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 30/87 (34%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = -1

Query: 499 RPSSPGL-ECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*HQTSQRWFRHP 323
           RP+SP     P  P   R RSP      SP   R S +  R P    R     +R    P
Sbjct: 269 RPASPSRGRSPSSPPPRRYRSPP---RGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPP 325

Query: 322 RHT*GRRRACCSFGRPRASRSLCPSSR 242
           R +  RRR+     RP  SRS   S R
Sbjct: 326 RRSPIRRRSRSPIRRPGRSRSSSISPR 352


>At1g51405.1 68414.m05786 myosin-related low similarity to nonmuscle
           myosin heavy chain from Gallus gallus [GI:212449],
           Xenopus laevis [GI:214624], Homo sapiens [GI:641958]
          Length = 487

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +3

Query: 45  SVKKKA*RTSTLKLKVNKRS-KERR-HLHVIL-ERNTFTAYRPLVTSRLTLGSSEREEEA 215
           SV++ A  +  LK  V+  S K+RR  L V+  +  TF     +V      G  + EEE 
Sbjct: 35  SVRRNA--SKGLKTTVSSSSQKDRRVKLEVLFHQERTFDRGASIVMVNDNGGEKKDEEEG 92

Query: 216 N*FTSVAEGRELGQS 260
                VA+GRE+G S
Sbjct: 93  RRRGKVADGREIGVS 107


>At5g38570.1 68418.m04664 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 379

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 438 QDWNAPAHQSWNGAP 394
           +DWN P H SW   P
Sbjct: 193 EDWNDPEHYSWTNMP 207


>At3g10525.1 68416.m01263 expressed protein
          Length = 128

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 529 VRCSCPTTMERPSSPGLECPRPPGLERSRSPGLECSRSPIMERS 398
           +RCS PT+ E      ++ P PP  +    P    + + +M RS
Sbjct: 39  LRCSTPTSQEHKIPAVVDSPPPPPRKPRPPPSAPSATAALMIRS 82


>At1g76970.1 68414.m08962 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to
           HGF-regulated tyrosine kinase substrate [Mus musculus]
           GI:1089781; contains Pfam profiles PF00790: VHS domain,
           PF03127: GAT domain
          Length = 446

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 472 PRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPAR*HQTSQRWFRH 326
           P PP    S S  +    SP   +SS +    P  P+R H   Q++F H
Sbjct: 342 PPPPHTSSSSSSPVFDDASPQQSKSSEVIRNLPPPPSR-HNQRQQFFEH 389


>At1g55300.1 68414.m06317 TATA-binding protein-associated factor
           TAFII55 family protein contains Pfam profile: PF04658
           TAFII55 protein conserved region
          Length = 203

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 529 VRCSCPTTMERPSSPGLECPRPPGLERSRS 440
           V  S PT +E+P +P      P G+E  RS
Sbjct: 165 VSSSSPTPVEKPEAPETGTSNPTGVEPERS 194


>At1g47570.1 68414.m05281 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 466

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +3

Query: 285 NEQHARRRPQVCRGCR-NHRW 344
           NE HAR+R  VCR  R NH +
Sbjct: 446 NEDHARKRNHVCRPTRGNHHF 466


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,868,782
Number of Sequences: 28952
Number of extensions: 195981
Number of successful extensions: 646
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)