Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A07
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    30   0.37 
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    29   0.85 
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   2.0  

>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 672 FVPFSAGPRSCVGCKYAMLKLKVILSTILRNF 577
           ++PF AG   C+G ++A + L  I+S  + ++
Sbjct: 432 YLPFGAGRHRCIGEQFAYMHLSTIISKFVHDY 463


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 395 IYQSNVFVNFKISVNKLEAVICDLSDIQNKPLNLY-SYLYYFVLNSFYIN 249
           +  SNVF+N  IS++    +   +S I   P +++ S++ Y  L+  Y N
Sbjct: 656 LLNSNVFINIVISLSSTYGMYLVVSIISFDPWHMFTSFVQYIFLSIMYTN 705


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 26  PSILXPNFISSSLRNFSVPIFVPSLLKRSXTIXT 127
           PS + PN ++SS+ NFSV  F+ +L + +  + T
Sbjct: 447 PSNVIPNSLTSSVSNFSVSSFLNNLKEDTEWLYT 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,314
Number of Sequences: 5004
Number of extensions: 39868
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)