Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A05
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0629 - 9961315-9961521,9962765-9963232                           28   4.7  
08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694...    27   8.2  

>03_02_0629 - 9961315-9961521,9962765-9963232
          Length = 224

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -3

Query: 174 NIEYRRGGFALIFLAEYSSILFIRMILVIINMGGYNLRFFFYLKLRLISF 25
           ++ YRRG    +FLA      ++ ++ V I++GG+   F F  +L+ I F
Sbjct: 22  HVRYRRGDTLGLFLA------WVSLVPVFISLGGFVSHFLFRRELQGICF 65


>08_02_0600 -
           19166283-19166851,19166988-19168839,19169347-19169415,
           19171797-19171844,19173500-19173622
          Length = 886

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 465 IVIIAGWSSNSNYALLGGLRSVAQTISY 382
           +V IAGWS +++ AL+   R  AQT+ +
Sbjct: 273 LVYIAGWSVSTDVALVRDPRRPAQTLGH 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,146,952
Number of Sequences: 37544
Number of extensions: 69471
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)