Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A04
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual          153   4e-38
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   6.0  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   8.0  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    26   8.0  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    26   8.0  

>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 312

 Score =  153 bits (370), Expect = 4e-38
 Identities = 68/148 (45%), Positives = 104/148 (70%), Gaps = 3/148 (2%)
 Frame = -2

Query: 592 KVVAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFLHCRAAADDLIEIISRNR 413
           KVVA GE GLDY+R H+   +VQ  +FE+QL +++   LPLFLH R A +D   I+ +  
Sbjct: 118 KVVAFGEFGLDYDRLHYAPADVQKMYFEEQLKVAVRVQLPLFLHSRNAENDFFAILEKYL 177

Query: 412 DKIIG-GVVHSFDGSEQDLQKILELGLSIGINGCSLRSKENIEVASKIPRDKLMIETDCP 236
            ++   GVVHSF GS  ++++ +E GL +G+NGCSL+++EN+EV   IP +K+++ETD P
Sbjct: 178 PELPKKGVVHSFTGSIDEMRRCIEHGLYVGVNGCSLKTEENLEVVRAIPLEKMLLETDAP 237

Query: 235 WCEIKPSHPGYCHVNTK--FETVKKTKY 158
           WCE++PSH G+  + TK  F++ KK ++
Sbjct: 238 WCEVRPSHAGHQFLKTKLPFDSCKKERF 265



 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
 Frame = -1

Query: 866 TDDMYKGVYNGSXKHEPDLDXVXERXWXSGINXIIVTGGSLEDSKKAIELXRTDXKLFT- 690
           TD +++G+Y+   KH  D D +  R    G+  +++TG ++E+S++A+ L  T+ + FT 
Sbjct: 22  TDPVFRGIYHEKLKHPDDFDSIISRAKAVGVEKMMITGDNVENSEEALNL-ATNYECFTS 80

Query: 689 TVGCHPTRCSEFL---SNPDDYLQGLRDLISGXQGQSCG 582
           TVG HP +   FL     P+DYL  L  L +  +G++ G
Sbjct: 81  TVGVHPCQAQCFLRHSEGPEDYLVKLEALAN--KGKASG 117


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 577 GECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFL 464
           GE  LD   FH+    + L+F      + + Y+LP+ L
Sbjct: 386 GENALDASAFHYSVYRIILRFLRMDGLMEIPYDLPVDL 423


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 860 DMYKGVYNGSXKHEPDLD 807
           D Y+ +YN    HEPDL+
Sbjct: 30  DNYEEIYNSLVHHEPDLE 47


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 301 KENIEVASKIPRDKLMIETDCPWCEIKPSHPGYC 200
           +E++++A K+ R     +TD PW +   +  G C
Sbjct: 59  EEDVDIAVKVAR--AAFQTDAPWRKFSSAQRGRC 90


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 499 PLSLEYNLPLFLHCRAAADDLIEIISRNRDKIIGGVVHSFDG 374
           P +L Y LP+F+ C A  ++    +     KI+ G V  F+G
Sbjct: 849 PQALSYLLPMFVLCVAEYENPSAELRDMFQKILQGSVELFNG 890


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,247,063
Number of Sequences: 5004
Number of extensions: 62707
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)