Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_A04
(866 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0412 + 3151059-3151090,3151374-3151833,3151899-3151979,315... 166 2e-41
07_01_0409 + 3143838-3144017,3144345-3144461,3144659-3144739,314... 85 7e-26
04_04_0886 - 29089083-29089211,29089702-29089890,29089968-290901... 62 7e-10
11_06_0124 + 20348269-20348413,20348753-20348874,20349210-203493... 29 4.8
08_02_1608 - 28205483-28205851,28206244-28206522 29 4.8
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 28 8.4
>07_01_0412 +
3151059-3151090,3151374-3151833,3151899-3151979,
3152682-3152752,3152827-3152937,3153149-3153231,
3153489-3153705,3154169-3154252,3154423-3154498
Length = 404
Score = 166 bits (404), Expect = 2e-41
Identities = 77/155 (49%), Positives = 104/155 (67%), Gaps = 1/155 (0%)
Frame = -2
Query: 598 KDKVVAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFLHCRAAADDLIEIISR 419
K KVVA+GECGLDY+R HFC +VQ K+F+KQ L+ LP+FLH RAA +D EI+S
Sbjct: 189 KGKVVAVGECGLDYDRLHFCPSDVQKKYFKKQFELAEAVKLPMFLHMRAAGEDFCEIVSE 248
Query: 418 NRDKIIGGVVHSFDGSEQDLQKILEL-GLSIGINGCSLRSKENIEVASKIPRDKLMIETD 242
N + GGV HSF G+ +D K+L + IGINGCSL++ EN+EV IP +++MIETD
Sbjct: 249 NLYRFPGGVTHSFTGTAEDRDKLLSFEKMFIGINGCSLKTSENLEVLQGIPAERMMIETD 308
Query: 241 CPWCEIKPSHPGYCHVNTKFETVKKTKYSLQSNAQ 137
P+C+IK +H G V + + + KK KY S +
Sbjct: 309 SPYCDIKNTHAGIKFVKSVWPSKKKEKYEPDSTVK 343
Score = 32.3 bits (70), Expect(2) = 2e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 851 KGVYNGSXKHEPDLDXVXERXWXSGINXIIV 759
+G+Y+G H D+ V R W +G++ IIV
Sbjct: 11 EGIYHGKQCHAADIPAVLARAWAAGVDRIIV 41
Score = 30.7 bits (66), Expect(2) = 2e-04
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = -1
Query: 761 VTGGSLEDSKKAIELXRTDXKL 696
VTGGSL++S++A+E+ TD +L
Sbjct: 82 VTGGSLKESREALEIAETDGEL 103
>07_01_0409 +
3143838-3144017,3144345-3144461,3144659-3144739,
3145335-3145405,3145479-3145589,3146194-3146382,
3146643-3146670
Length = 258
Score = 85.0 bits (201), Expect(2) = 7e-26
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = -2
Query: 598 KDKVVAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFLHCRAAADDLIEIISR 419
K KVVA+GECGLDY+R HFC +VQ K+F+KQ L+ LP+FLH RAA +D EI+S
Sbjct: 124 KGKVVAVGECGLDYDRLHFCPSDVQKKYFKKQFELAEAVKLPMFLHMRAAGEDFCEIVSE 183
Query: 418 N 416
N
Sbjct: 184 N 184
Score = 50.8 bits (116), Expect(2) = 7e-26
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = -2
Query: 298 ENIEVASKIPRDKLMIETDCPWCEIKPSHPGYCHVNTKFETVKKTKYSLQSNAQ 137
EN EV IP +++MIETD P+C+IK +H G V + + + KK KY S +
Sbjct: 188 ENFEVLQGIPAERMMIETDSPYCDIKNTHAGIKLVKSVWPSKKKEKYEPDSTVK 241
Score = 31.5 bits (68), Expect = 0.90
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -1
Query: 761 VTGGSLEDSKKAIELXRTDXKLFTTVGCHPTRCSEFL 651
VTGGSL++S++A+E+ TD +L C C +++
Sbjct: 61 VTGGSLKESREALEIAETDGEL----SCFDAACFDYV 93
>04_04_0886 -
29089083-29089211,29089702-29089890,29089968-29090121,
29090389-29090489,29090970-29091020,29092606-29092761
Length = 259
Score = 61.7 bits (143), Expect = 7e-10
Identities = 31/99 (31%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Frame = -2
Query: 526 QLKFFEKQLPLSLEYNLPLFLHCRAAADDLIEIISRNRDKIIGGVVHSFDGSEQDLQKIL 347
Q++ F++QL L+ E N P+ +HC A DL+EI+ R G ++HS+ GS + + +
Sbjct: 69 QVEVFQQQLELAKELNKPVSVHCVRAFGDLLEILKRTGPFPAGVLLHSYLGSAEMVSSLE 128
Query: 346 ELGLSIGING--CSLRSKENIEVASKIPRDKLMIETDCP 236
LG ++G ++S + ++ +P D++++ETD P
Sbjct: 129 ILGCYFSLSGFLTGMKSTKAKKMLKSMPLDRILLETDAP 167
>11_06_0124 +
20348269-20348413,20348753-20348874,20349210-20349318,
20349401-20349440,20350245-20350334,20350388-20350547,
20350656-20350795,20351390-20351492,20351667-20352178,
20352267-20352543
Length = 565
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 427 LFQSGHQLPLDSEGTTANCTPDSTEVASQKILVALPSHKSET 552
L SGH+L + T ANC D + + + V + H+ T
Sbjct: 293 LIGSGHKLYQKAVSTVANCDEDYKKALREPLYVRIREHRGST 334
>08_02_1608 - 28205483-28205851,28206244-28206522
Length = 215
Score = 29.1 bits (62), Expect = 4.8
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = -2
Query: 481 NLPLFLHCRAAADDLIEIISRNRDKIIGGVVHSFDGSEQ--DLQKILE---LGLSIGI-N 320
+LP+ C AA E +R RD I G V H F +Q LQ LE + G +
Sbjct: 55 HLPVSDRCEAAVTMSYEAQARLRDPIYGCVAHIFSLQQQVVSLQAQLESLKAQATQGYGD 114
Query: 319 GCSLRSKEN 293
GCS+ S +N
Sbjct: 115 GCSISSPQN 123
>04_03_0998 -
21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 28.3 bits (60), Expect = 8.4
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 9/115 (7%)
Frame = -2
Query: 448 ADDLIEIISRNRD--------KIIGGVVHSFDGSEQDLQKILELGLSIGINGCSLRSKEN 293
A DL+EI + D K+I +FDGS+++ + EL G +G S R
Sbjct: 3 AKDLVEIGMKEEDITTMLFGKKVIELTEDAFDGSKEERKIFEELFCRTGTSGASTRHPRR 62
Query: 292 IEVASKI-PRDKLMIETDCPWCEIKPSHPGYCHVNTKFETVKKTKYSLQSNAQVQ 131
+S + K +I T+ P C V F + Y + N Q
Sbjct: 63 DGKSSSLRDASKELISTNTPSSSASNHKSARCRVVESFTYGNLSSYLVFCNNDKQ 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,458,032
Number of Sequences: 37544
Number of extensions: 424657
Number of successful extensions: 934
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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