Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A04
         (866 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4024| Best HMM Match : TatD_DNase (HMM E-Value=0)                   77   1e-14
SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   6e-14
SB_58955| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   2e-12
SB_56494| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_14014| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.70 
SB_36237| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_4796| Best HMM Match : Arfaptin (HMM E-Value=3.5e-16)               29   4.9  
SB_59275| Best HMM Match : CopB (HMM E-Value=7.9)                      28   8.6  
SB_49896| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_4024| Best HMM Match : TatD_DNase (HMM E-Value=0)
          Length = 236

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 4/124 (3%)
 Frame = -2

Query: 592 KVVAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFLHCRAAADDLIEIISRNR 413
           K VA+GECGLDY +    +   Q + F +Q+ L++E   PL +HCR A  D ++++  + 
Sbjct: 75  KAVALGECGLDYSKRSKAQPSKQAEVFVRQMKLAVELKKPLIIHCRNAESDTLDLLKSSM 134

Query: 412 DKIIGGVVHSFDGSEQDLQKILE--LGLSIGING--CSLRSKENIEVASKIPRDKLMIET 245
                  +H + GS    QK L     L IG+ G   S  +++   +A +IP D+L++ET
Sbjct: 135 PTDWKIHLHCYTGSVDFAQKFLHQFSNLYIGLTGIVTSSNARDVQNLARQIPLDRLLLET 194

Query: 244 DCPW 233
           D P+
Sbjct: 195 DAPY 198


>SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 75.4 bits (177), Expect = 6e-14
 Identities = 42/132 (31%), Positives = 77/132 (58%), Gaps = 12/132 (9%)
 Frame = -2

Query: 592 KVVAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFLHCRAAADDLIEIISRNR 413
           +V+A+GE GLD+ R ++ +KEVQ++ FEKQ+ L+ E+  PL  H R++    +E++S   
Sbjct: 233 EVIAVGEVGLDFYR-NYSKKEVQIEAFEKQVELACEFQKPLLAHERSSHIKFVEVLSNFS 291

Query: 412 DKIIGGVVHSFDGSEQDLQKILELGLSIGING----CSLRSKENIEVASK--------IP 269
            ++   V+H F G++ ++   + +G  IGI G     +L S   ++ A K         P
Sbjct: 292 GRLPPIVIHCFTGTKAEMIAYIAMGFYIGITGYICKANLISPPYLDTAGKNLREAIIDCP 351

Query: 268 RDKLMIETDCPW 233
            D++++E+D P+
Sbjct: 352 LDRILLESDAPY 363



 Score = 34.7 bits (76), Expect = 0.099
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -1

Query: 815 DLDXVXERXWXSGINXIIVTGGSLEDSKKAIELXRT-DXKLFTTVGCHPTRCSEFLSNPD 639
           DLD V +R   +GI  +I+TG ++     A+ L R     +F  VG HP    +  +  D
Sbjct: 162 DLDFVVDRATNAGIKKMILTGNTIRMCHNAVTLARDHPGVIFGGVGIHPHFVEKEWN--D 219

Query: 638 DYLQGLRDLIS 606
           D  + +R +IS
Sbjct: 220 DTYEVMRGMIS 230


>SB_58955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 28/73 (38%), Positives = 52/73 (71%)
 Frame = -2

Query: 376 GSEQDLQKILELGLSIGINGCSLRSKENIEVASKIPRDKLMIETDCPWCEIKPSHPGYCH 197
           G+++ + ++L +     ++  SL++++NI+V   IP D+L+IETD PWCEI+P+H G+ +
Sbjct: 101 GTDEGVSEVLHVAGEKRLHR-SLKTQDNIDVMKTIPSDRLLIETDAPWCEIRPTHAGFKY 159

Query: 196 VNTKFETVKKTKY 158
           + TKF+  KK ++
Sbjct: 160 IQTKFDCKKKERW 172



 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
 Frame = -1

Query: 767 IIVTGGSLEDSKKAIELXRTDXKLFTTVGCHPTRCSEFL---SNPDDYLQGLRDL 612
           +I+T G+  +S+KA++L +        VGCHPTRC+EF    SNPD+YL  L  L
Sbjct: 1   MIITSGNYSESEKALKLAKEQ------VGCHPTRCTEFESKGSNPDEYLNKLLSL 49



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = -2

Query: 607 QEXKDKVVAIGECGL 563
           Q+ K+KVVA+GECGL
Sbjct: 51  QDNKEKVVAVGECGL 65


>SB_56494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
 Frame = -2

Query: 592 KVVAIGECGLDYE-RFHFCEKE--VQLKFFEKQLPLSLEYNLPLFLHCRAAADDLIEIIS 422
           K+ A+GE GLD+  RF   +K+  +Q + F +Q+ L+ E +LP+ +H R+A   +I+I+ 
Sbjct: 63  KLFAVGEIGLDFTPRFIKSDKDKGIQKEVFVRQIKLAQELDLPVNVHSRSAGRHVIQILK 122

Query: 421 RNRDKIIGGVVHSFDGSEQDLQKILELGLSIGINGCSLRSKE 296
                 +  ++H+FDG      +  + G    I    +RS++
Sbjct: 123 EQGASRV--LLHAFDGRASVALQGAQAGFFFSIPPSIVRSEQ 162


>SB_14014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 689 TVGC-HPTRCSEFLSNPDDYLQGLRDLISGXQGQSCGYRR 573
           TVGC HP        NPD+YLQ    LI G + Q  G++R
Sbjct: 144 TVGCWHPMHY-----NPDEYLQASEQLIIGTRRQKDGHKR 178


>SB_36237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 527

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 755 GGSLEDSKKAIELXRTDXKLFTTVGCHPTRCSEFLSNPD 639
           G S  D+KK  E   T  KL T V CHP      L + D
Sbjct: 323 GSSRRDNKKLSEELSTGRKLKTRVPCHPDELKPQLPDND 361


>SB_4796| Best HMM Match : Arfaptin (HMM E-Value=3.5e-16)
          Length = 270

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 394 VVHSFDGSEQDLQKILELGLSI-GINGCSLRSKENIEVASKI 272
           VV  FD +       L+ G  I G+NG SLR K  ++VA  I
Sbjct: 46  VVQVFDNTPASKDGTLQAGDEIVGVNGKSLRGKTKVDVARAI 87


>SB_59275| Best HMM Match : CopB (HMM E-Value=7.9)
          Length = 216

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -1

Query: 710 TDXKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISGXQGQS 588
           T+    TT G   TR        D  +Q L DL+SG QGQS
Sbjct: 8   TNTSTSTTAGTQTTR-----PGGDSVVQSLMDLLSGIQGQS 43


>SB_49896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -2

Query: 394 VVHSFDGSEQDLQKILELGLSIGINGCSLRSKENIEVASKIPRDKLMIETDCP-WCEIKP 218
           ++ +F+ +   ++   + G  IG+N CS     + +++S  P D L++E   P W    P
Sbjct: 26  IIEAFNFARSRMRLYTDAG-RIGLNACSFVRLHHSKLSSTGPGDPLVLERPPPRWSSNSP 84

Query: 217 SHPGY 203
               Y
Sbjct: 85  YSESY 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,662,361
Number of Sequences: 59808
Number of extensions: 482866
Number of successful extensions: 1116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)