Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_A04
(866 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY303576-1|AAP57298.1| 286|Caenorhabditis elegans cell death-re... 87 2e-17
AF036694-6|AAB88340.1| 286|Caenorhabditis elegans Cell-death-re... 87 2e-17
U80836-6|AAB37894.2| 259|Caenorhabditis elegans Hypothetical pr... 68 1e-11
AL132863-1|CAB60573.1| 477|Caenorhabditis elegans Hypothetical ... 62 4e-10
AL110480-1|CAB60325.2| 437|Caenorhabditis elegans Hypothetical ... 58 8e-09
Z81486-2|CAB03984.1| 461|Caenorhabditis elegans Hypothetical pr... 28 9.9
>AY303576-1|AAP57298.1| 286|Caenorhabditis elegans cell
death-related nuclease 2 protein.
Length = 286
Score = 87.0 bits (206), Expect = 2e-17
Identities = 43/123 (34%), Positives = 77/123 (62%), Gaps = 5/123 (4%)
Frame = -2
Query: 586 VAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFLHCRAAADDLIEIISRNRDK 407
VA+GECGLD+ R +F ++VQ + F KQ+ ++++ PLF+H R A +D+++I++
Sbjct: 93 VAVGECGLDFNR-NFSPQDVQKEVFAKQVDMAVKLQKPLFIHEREAHEDMVKILTAAGPS 151
Query: 406 IIGGVVHSFDGSEQDLQKILELGLSIGINGCSLRSKENIEV-----ASKIPRDKLMIETD 242
+ V+H F G+ + +K LE+G IG+ G + + + V + +IP +KL++ETD
Sbjct: 152 LPPAVIHCFTGTVVEAKKYLEMGFYIGLTGFLWKDRSDNGVQAGLRSGEIPIEKLVLETD 211
Query: 241 CPW 233
P+
Sbjct: 212 APY 214
>AF036694-6|AAB88340.1| 286|Caenorhabditis elegans
Cell-death-related nuclease protein2 protein.
Length = 286
Score = 87.0 bits (206), Expect = 2e-17
Identities = 43/123 (34%), Positives = 77/123 (62%), Gaps = 5/123 (4%)
Frame = -2
Query: 586 VAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFLHCRAAADDLIEIISRNRDK 407
VA+GECGLD+ R +F ++VQ + F KQ+ ++++ PLF+H R A +D+++I++
Sbjct: 93 VAVGECGLDFNR-NFSPQDVQKEVFAKQVDMAVKLQKPLFIHEREAHEDMVKILTAAGPS 151
Query: 406 IIGGVVHSFDGSEQDLQKILELGLSIGINGCSLRSKENIEV-----ASKIPRDKLMIETD 242
+ V+H F G+ + +K LE+G IG+ G + + + V + +IP +KL++ETD
Sbjct: 152 LPPAVIHCFTGTVVEAKKYLEMGFYIGLTGFLWKDRSDNGVQAGLRSGEIPIEKLVLETD 211
Query: 241 CPW 233
P+
Sbjct: 212 APY 214
>U80836-6|AAB37894.2| 259|Caenorhabditis elegans Hypothetical
protein B0432.8 protein.
Length = 259
Score = 67.7 bits (158), Expect = 1e-11
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 4/129 (3%)
Frame = -2
Query: 610 YQEXKDKVVAIGECGLDYERFHFC----EKEVQLKFFEKQLPLSLEYNLPLFLHCRAAAD 443
+ E + ++ +GECGLD+ F + E Q F+ Q+ L+ + PL +H R+AA
Sbjct: 84 FVEHERDIICVGECGLDHTISQFKLTTEDFEEQETVFKWQIDLAKHFEKPLNVHSRSAAR 143
Query: 442 DLIEIISRNRDKIIGGVVHSFDGSEQDLQKILELGLSIGINGCSLRSKENIEVASKIPRD 263
IEI+ V+H+FDG+ DL+ LE G I +S+E ++ IP
Sbjct: 144 RTIEILLECHVAPDQVVLHAFDGTPGDLKLGLEAGYLFSIPPSFGKSEETTQLIESIPLS 203
Query: 262 KLMIETDCP 236
+L++ETD P
Sbjct: 204 QLLLETDSP 212
>AL132863-1|CAB60573.1| 477|Caenorhabditis elegans Hypothetical
protein Y37H2A.1 protein.
Length = 477
Score = 62.5 bits (145), Expect = 4e-10
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Frame = -2
Query: 592 KVVAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFLHCRA-----AADDLIEI 428
KV+A+GECGLD R + EVQ FEK + L+ +Y LPL +HCR+ A + + I
Sbjct: 292 KVLAVGECGLDLHRC-ISDLEVQKMVFEKHIDLAYKYQLPLVIHCRSGQKGRAEEQCLRI 350
Query: 427 ISRNRD---KIIGGVVHSFDGSEQDLQKILEL--GLSIGINGC--SLRSKENIEVASKIP 269
+ + D K + H F + + Q ++ + G +R ++ +E IP
Sbjct: 351 LKKKMDENHKFLKIHRHCFTETWEVAQMWMKQCPNVYFGYTAAIFKMRERQQLEAIRHIP 410
Query: 268 RDKLMIETDCPW 233
+++++ETD P+
Sbjct: 411 LNRILLETDAPY 422
>AL110480-1|CAB60325.2| 437|Caenorhabditis elegans Hypothetical
protein Y24F12A.1 protein.
Length = 437
Score = 58.0 bits (134), Expect = 8e-09
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 11/135 (8%)
Frame = -2
Query: 592 KVVAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFLHCR-----AAADDLIEI 428
KV+A+GECG+D R E EVQ FEK + L+ ++ LPL +HCR A ++ ++I
Sbjct: 253 KVLAVGECGIDLHRCE-SELEVQKDVFEKHVALAFKFKLPLVIHCRNGSKGRAEEECLQI 311
Query: 427 ISRNRD---KIIGGVVHSFDGSEQDLQKILEL--GLSIGIN-GCSLRSKENIEVASKIPR 266
+ + D K + H F + + Q L+ + G I+ IP
Sbjct: 312 LKKKMDVNHKFLKIHRHCFTENWEVAQMWLKQCPDVHFGFTPAVFTMGAPQIQAIRNIPL 371
Query: 265 DKLMIETDCPWCEIK 221
D++++ETD P+ + K
Sbjct: 372 DRILLETDGPYFKPK 386
>Z81486-2|CAB03984.1| 461|Caenorhabditis elegans Hypothetical
protein C53A5.3 protein.
Length = 461
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 182 KLRVDMTITWMGGLYFAPRT 241
K +VD+ I WMGGL+ A ++
Sbjct: 130 KQKVDIAINWMGGLHHAKKS 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,215,873
Number of Sequences: 27780
Number of extensions: 364505
Number of successful extensions: 887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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