Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_A04
(866 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52390.2 68416.m05762 tatD-related deoxyribonuclease family p... 170 9e-43
At3g52390.1 68416.m05761 tatD-related deoxyribonuclease family p... 170 9e-43
At3g03500.1 68416.m00348 tatD-related deoxyribonuclease family p... 70 2e-12
At5g17570.1 68418.m02061 tatD-related deoxyribonuclease family p... 60 2e-09
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ... 30 1.7
At4g21180.1 68417.m03063 DNAJ heat shock N-terminal domain-conta... 29 5.3
At4g03690.1 68417.m00504 hypothetical protein very low similarit... 29 5.3
At3g06380.1 68416.m00736 F-box family protein / tubby family pro... 29 5.3
At1g08125.1 68414.m00891 Expressed protein 29 5.3
At4g02030.1 68417.m00273 expressed protein 28 7.0
>At3g52390.2 68416.m05762 tatD-related deoxyribonuclease family
protein similar to SP|P27859 Deoxyribonuclease tatD (EC
3.1.21.-) (DNAse tatD) {Escherichia coli}; contains Pfam
profile PF01026: TatD related DNase
Length = 323
Score = 170 bits (414), Expect = 9e-43
Identities = 77/152 (50%), Positives = 105/152 (69%), Gaps = 1/152 (0%)
Frame = -2
Query: 598 KDKVVAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFLHCRAAADDLIEIISR 419
K KVVAIGECGLDY+R FC ++Q K+FEKQ L+ LP+FLH RAAA+D EI+ R
Sbjct: 110 KGKVVAIGECGLDYDRLQFCSVDIQKKYFEKQFELAYATKLPMFLHMRAAAEDFCEIVER 169
Query: 418 NRDKIIGGVVHSFDGSEQDLQKILELG-LSIGINGCSLRSKENIEVASKIPRDKLMIETD 242
N+++ GGV HSF GS D K+L + +G+NGCSL++ EN+EV IP +++MIETD
Sbjct: 170 NKNRFTGGVAHSFTGSASDRDKLLSFDKMYLGVNGCSLKTAENLEVMKGIPVERMMIETD 229
Query: 241 CPWCEIKPSHPGYCHVNTKFETVKKTKYSLQS 146
P+C+IK +H G V + + + KK KY +S
Sbjct: 230 SPYCDIKNTHAGIKFVKSTWPSKKKEKYDQES 261
Score = 95.9 bits (228), Expect = 3e-20
Identities = 43/87 (49%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Frame = -1
Query: 866 TDDMYKGVYNGSXKHEPDLDXVXERXWXSGINXIIVTGGSLEDSKKAIELXRTDXKLFTT 687
TD M+KG+Y+G H PD+ V R W +G++ IIVTGGSLE+S++A+ + TD +LF T
Sbjct: 17 TDGMFKGLYHGKNCHVPDIATVLNRAWSAGVDRIIVTGGSLEESREALAIAETDGRLFCT 76
Query: 686 VGCHPTRCSEF--LSNPDDYLQGLRDL 612
VG HPTRC+EF +P+ + Q L L
Sbjct: 77 VGVHPTRCNEFEESGDPEKHYQALFSL 103
>At3g52390.1 68416.m05761 tatD-related deoxyribonuclease family
protein similar to SP|P27859 Deoxyribonuclease tatD (EC
3.1.21.-) (DNAse tatD) {Escherichia coli}; contains Pfam
profile PF01026: TatD related DNase
Length = 304
Score = 170 bits (414), Expect = 9e-43
Identities = 77/152 (50%), Positives = 105/152 (69%), Gaps = 1/152 (0%)
Frame = -2
Query: 598 KDKVVAIGECGLDYERFHFCEKEVQLKFFEKQLPLSLEYNLPLFLHCRAAADDLIEIISR 419
K KVVAIGECGLDY+R FC ++Q K+FEKQ L+ LP+FLH RAAA+D EI+ R
Sbjct: 91 KGKVVAIGECGLDYDRLQFCSVDIQKKYFEKQFELAYATKLPMFLHMRAAAEDFCEIVER 150
Query: 418 NRDKIIGGVVHSFDGSEQDLQKILELG-LSIGINGCSLRSKENIEVASKIPRDKLMIETD 242
N+++ GGV HSF GS D K+L + +G+NGCSL++ EN+EV IP +++MIETD
Sbjct: 151 NKNRFTGGVAHSFTGSASDRDKLLSFDKMYLGVNGCSLKTAENLEVMKGIPVERMMIETD 210
Query: 241 CPWCEIKPSHPGYCHVNTKFETVKKTKYSLQS 146
P+C+IK +H G V + + + KK KY +S
Sbjct: 211 SPYCDIKNTHAGIKFVKSTWPSKKKEKYDQES 242
Score = 91.9 bits (218), Expect = 5e-19
Identities = 41/84 (48%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Frame = -1
Query: 857 MYKGVYNGSXKHEPDLDXVXERXWXSGINXIIVTGGSLEDSKKAIELXRTDXKLFTTVGC 678
M+KG+Y+G H PD+ V R W +G++ IIVTGGSLE+S++A+ + TD +LF TVG
Sbjct: 1 MFKGLYHGKNCHVPDIATVLNRAWSAGVDRIIVTGGSLEESREALAIAETDGRLFCTVGV 60
Query: 677 HPTRCSEF--LSNPDDYLQGLRDL 612
HPTRC+EF +P+ + Q L L
Sbjct: 61 HPTRCNEFEESGDPEKHYQALFSL 84
>At3g03500.1 68416.m00348 tatD-related deoxyribonuclease family
protein weak similarity to SP|P27859 Deoxyribonuclease
tatD (EC 3.1.21.-) (DNAse tatD) {Escherichia coli};
contains Pfam profile PF01026: TatD related DNase
Length = 272
Score = 70.1 bits (164), Expect = 2e-12
Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Frame = -2
Query: 583 AIGECGLDYERFHF-CEKEVQLKFFEKQLPLSLEYNLPLFLHCRAAADDLIEIISRNRDK 407
A+GE GLD + QL F QL L+ E N P+ +HC A DDL+EI+
Sbjct: 90 AVGEIGLDKGPLAGGIDYSDQLVVFRPQLELAKELNKPVAVHCIDAFDDLLEIMRSIGPF 149
Query: 406 IIGGVVHSFDGSEQDLQKILELGLSIGINGCSLRSKENI--EVASKIPRDKLMIETDCP 236
G ++HSF+GS + + K+ ELG +G E I + IP D+L++ETD P
Sbjct: 150 PAGVILHSFNGSAEVVPKLAELGAYFSFSGWFTYIDEKIAKKTLKSIPSDRLLLETDSP 208
>At5g17570.1 68418.m02061 tatD-related deoxyribonuclease family
protein contains Pfam profile PF01026: TatD related
DNase
Length = 325
Score = 60.1 bits (139), Expect = 2e-09
Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Frame = -2
Query: 583 AIGECGLDY-ERFHFCEKEVQLKFFEKQLPLSLEYNLPLFLHCRAAADDLIEIISRNRDK 407
A+GE GLD + + Q+ F +QL L+ E P +HC A DL+EI+
Sbjct: 90 AVGEIGLDKGSKGREIDFSEQVTVFRQQLELAKELKKPASVHCVRAFGDLLEILKSVGPF 149
Query: 406 IIGGVVHSFDGSEQDLQKILELGLSIGING--CSLRSKENIEVASKIPRDKLMIETDCP 236
G ++HS+ GS + + + +LG +G S+ K+ ++ +P D++++ETD P
Sbjct: 150 PSGVMLHSYLGSAEMVPEFAKLGAYFSFSGFLMSMSEKKAKKMLKAVPSDRILLETDSP 208
>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 687
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = +3
Query: 222 FISHHGQSVSIMSLSLGIFEATSIFSFERREHPLMPIDRPNSRIFCRSCS 371
F HH +I L + F ++ EHPL PN C+ C+
Sbjct: 454 FYEHHTDQENIFMLDIHCASIFEPFQYQGHEHPLFLPSEPNKWGRCQMCT 503
>At4g21180.1 68417.m03063 DNAJ heat shock N-terminal
domain-containing protein / sec63 domain-containing
protein similar to SP|Q9UGP8 Translocation protein SEC63
homolog {Homo sapiens}; contains Pfam profiles PF00226
DnaJ domain, PF02889 Sec63 domain
Length = 661
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 433 EIISRNRDKIIGGVVHSFDGSEQDLQKILELGLSIGIN-GCSLRSKENIE 287
E+ R K++ VV + QD++K+LE+ S+ IN C +E I+
Sbjct: 414 ELSLAERSKLLREVVSLSETDVQDIEKVLEMIPSLKINVTCKTEGEEGIQ 463
>At4g03690.1 68417.m00504 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 570
Score = 28.7 bits (61), Expect = 5.3
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = -2
Query: 463 HCRAAADD-LIEIISRNRDKIIGGVVHSFDGSEQDLQKILELGLSIGINGCSLRSKENIE 287
+C + D L +IIS DK +GG V F G D ++IL + ++ G ++ N
Sbjct: 307 YCFKSLDKRLRDIISTPEDKPLGGKVILFGG---DFRQILHVIVAAGRELIGKLNEPNDG 363
Query: 286 VAS-KIPRDKLMIETDCP 236
V +IP D L+ E D P
Sbjct: 364 VTPIQIPDDILIFEGDNP 381
>At3g06380.1 68416.m00736 F-box family protein / tubby family
protein similar to phosphodiesterase (GI:467578) [Mus
musculus]; similar to C-terminal half of tubby protein
(A mutation in the tub gene causes maturity-onset
obesity, insulin resistance, and sensory deficits)
(GB:P50586) (GI:6730158)[Mus musculus]; contains Pfam
PF00646: F-box domain and Pfam PF01167: Tub family;
similar to Tubby protein homolog (Swiss-Prot:O88808)
[Rattus norvegicus]
Length = 380
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +3
Query: 264 SLGIFEATSIFSFERREHPLMPIDRPNSRIFCRSCSDPSKECTTPP 401
S G+ +TSI SF R P+ R SCSD PP
Sbjct: 245 SRGVVASTSISSFSSRSSPVFRSHSKPLRSNSASCSDSGNNLGDPP 290
>At1g08125.1 68414.m00891 Expressed protein
Length = 315
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 310 LRSKENIEVASKIPRDKLMIETDCPWCEIKPSHPGYCHVNTKFETV 173
+ K E + + RD+++I+TD CE K G CH + E V
Sbjct: 223 MAQKSAAESSGNVSRDEVVIDTDETKCETKVP-TGECHKRVEEEAV 267
>At4g02030.1 68417.m00273 expressed protein
Length = 694
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 523 LKFFEKQLPLSLEYNLPLFLHCRAAADDLIEIISRN 416
++F+ +P+ Y F CR A+++ IEII +N
Sbjct: 180 VRFYTGAMPILKVYGDTSFQDCRRASEEAIEIIIKN 215
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,164,955
Number of Sequences: 28952
Number of extensions: 340526
Number of successful extensions: 830
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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