Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_A03
(409 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 28 3.0
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 28 3.0
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 28 3.0
Z92829-5|CAB07345.1| 324|Caenorhabditis elegans Hypothetical pr... 27 3.9
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 27 3.9
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 27 3.9
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 27 5.2
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 27 5.2
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 27 5.2
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 27 5.2
U41263-5|AAC24427.1| 400|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z69385-9|CAA93425.4| 152|Caenorhabditis elegans Hypothetical pr... 26 9.1
AL031627-22|CAI79188.1| 213|Caenorhabditis elegans Hypothetical... 26 9.1
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -3
Query: 119 TRRPT---LNHGRLTGTSSTSSILPSETTLRRNLLPPKT 12
T+RPT L G + +SST S S TT LPP T
Sbjct: 950 TQRPTSPILTSGATSTSSSTESTTTSPTTSTTTTLPPTT 988
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -2
Query: 159 TLRLALRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAPK 16
+LR +L N T A RNKQ+ YS D S+ APK
Sbjct: 728 SLRCSLNNLLEKSRSMTGKFLQTAVRNKQFNMYSENGDLSRPSDSAPK 775
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -2
Query: 159 TLRLALRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAPK 16
+LR +L N T A RNKQ+ YS D S+ APK
Sbjct: 786 SLRCSLNNLLEKSRSMTGKFLQTAVRNKQFNMYSENGDLSRPSDSAPK 833
>Z92829-5|CAB07345.1| 324|Caenorhabditis elegans Hypothetical
protein F10A3.5 protein.
Length = 324
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 180 CGGAVFYTLRLALRNPDVSWNKKTNPEPWEAY--RNKQYKFYSP 55
C A+++ L L +P +++ PE WE+Y + +Y + P
Sbjct: 141 CNSAIWFFCFLVLNSPSPMKDEELFPEFWESYCLKPNEYTYTGP 184
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +3
Query: 69 CTACSCKPPMVQGWSSCSKIHQDYAKP----DAEYRTQLHHILSPHIHTEGSKPYASSNL 236
C +CKP +++ + C K+ ++ K D + + H IL+ P+A +
Sbjct: 39 CAENTCKPDILRVPAHCGKLDKEEEKSKTPLDQQQQINFHDILNSKFVVGPPSPFALVAI 98
Query: 237 RGSVLA 254
S+LA
Sbjct: 99 AKSILA 104
>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
protein F07B7.12 protein.
Length = 1900
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +3
Query: 69 CTACSCKPPMVQGWSSCSKIHQDYAKP----DAEYRTQLHHILSPHIHTEGSKPYASSNL 236
C +CKP +++ + C K+ ++ K D + + H IL+ P+A +
Sbjct: 39 CAENTCKPDILRVPAHCGKLDKEEEKSKTPLDQQQQINFHDILNSKFVVGPPSPFALVAI 98
Query: 237 RGSVLA 254
S+LA
Sbjct: 99 AKSILA 104
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 90 AYRNKQYKFYSPIRDYSKEESPAPK 16
A RNKQ+ YS D S+ APK
Sbjct: 785 AVRNKQFNMYSENGDLSRPSDSAPK 809
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 90 AYRNKQYKFYSPIRDYSKEESPAPK 16
A RNKQ+ YS D S+ APK
Sbjct: 843 AVRNKQFNMYSENGDLSRPSDSAPK 867
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 90 AYRNKQYKFYSPIRDYSKEESPAPK 16
A RNKQ+ YS D S+ APK
Sbjct: 896 AVRNKQFNMYSENGDLSRPSDSAPK 920
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 90 AYRNKQYKFYSPIRDYSKEESPAPK 16
A RNKQ+ YS D S+ APK
Sbjct: 815 AVRNKQFNMYSENGDLSRPSDSAPK 839
>U41263-5|AAC24427.1| 400|Caenorhabditis elegans Hypothetical
protein T19D12.7 protein.
Length = 400
Score = 26.6 bits (56), Expect = 6.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 111 SSCSKIHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGSVLA 254
S C + Y D Y T LHH+L IH + P +S + RG ++
Sbjct: 69 SMCHLLRSSYPDYDISYLTSLHHLL---IHF--NIPSSSYSARGKTMS 111
>Z69385-9|CAA93425.4| 152|Caenorhabditis elegans Hypothetical
protein ZK593.2 protein.
Length = 152
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 164 SILCVWLCVILMYLGTR-RPTLNHGRLTGTSST 69
S+LCV+LC+++ TR RP+ H T T
Sbjct: 5 SLLCVFLCILISAPFTRSRPSEEHPMYTAARLT 37
>AL031627-22|CAI79188.1| 213|Caenorhabditis elegans Hypothetical
protein Y102A5C.36 protein.
Length = 213
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 179 HPIPTHTYRGIKALCFFKLERLSPCILNYLI 271
H IP G+K LCFF +S IL +L+
Sbjct: 5 HLIPRALLLGLKNLCFFVFPFVSFIILMFLV 35
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,347,875
Number of Sequences: 27780
Number of extensions: 218183
Number of successful extensions: 677
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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