Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_pT_A03
(409 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g15980.1 68414.m01917 expressed protein 30 0.52
At4g02540.1 68417.m00347 DC1 domain-containing protein contains ... 30 0.69
At3g49210.1 68416.m05378 expressed protein 30 0.69
At1g66450.1 68414.m07549 DC1 domain-containing protein contains ... 29 0.91
At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein... 29 0.91
At4g26380.1 68417.m03795 DC1 domain-containing protein contains ... 28 2.1
At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative ... 28 2.1
At4g29140.1 68417.m04170 MATE efflux protein-related several hyp... 27 3.7
At3g49200.1 68416.m05377 hypothetical protein 27 6.4
At2g44600.1 68415.m05552 expressed protein 27 6.4
At5g66470.1 68418.m08382 expressed protein 26 8.5
At5g13250.1 68418.m01522 hypothetical protein 26 8.5
At3g23740.1 68416.m02985 expressed protein 26 8.5
At3g04900.1 68416.m00532 heavy-metal-associated domain-containin... 26 8.5
At2g07300.1 68415.m00837 hypothetical protein 26 8.5
>At1g15980.1 68414.m01917 expressed protein
Length = 461
Score = 30.3 bits (65), Expect = 0.52
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = -2
Query: 162 YTLRLALRNPDVSWN--KKTNP--EPWEAYRNKQYKFYSPIRDYSKEESPAPKD 13
+ RL R+ DVS N KK NP +P+++ + ++ S D ++E P P D
Sbjct: 32 FQTRLTSRSSDVSVNLKKKNNPWLDPFDSGEDPDNEYGSLFADGKQDEDPRPPD 85
>At4g02540.1 68417.m00347 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 822
Score = 29.9 bits (64), Expect = 0.69
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 57 ENRTCTACSCKPPMVQGWSSCSKIHQDYAKPDAEYRTQLHHILSPHIHT 203
EN+ C AC+ P + SC + + A +R ++HH PH+ T
Sbjct: 552 ENKLCQACTT-PIYFGNFFSCMQCDFILHEKCANFRRKIHHPTHPHLLT 599
>At3g49210.1 68416.m05378 expressed protein
Length = 518
Score = 29.9 bits (64), Expect = 0.69
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 97 WFRVGLLVPRYIRITQSQTQSIEHSSTTSYPHTYI 201
W R ++V ++ ++ QTQ+IE+ + ++ TY+
Sbjct: 92 WVRTNVVVTDHVIVSDIQTQNIENGNADAFLETYV 126
>At1g66450.1 68414.m07549 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 700
Score = 29.5 bits (63), Expect = 0.91
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 57 ENRTCTACSCKPPMVQG-WSSCSKIHQDYAKPDAEYRTQLHHILSPHIHT 203
EN+ C AC P+ G + SC K + + A + ++HH + PH+ T
Sbjct: 422 ENKLCQACIT--PIYSGKFYSCMKCNFILHEECANFSRKIHHPIHPHMLT 469
>At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 535
Score = 29.5 bits (63), Expect = 0.91
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 141 RNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDY 43
R +V +N PE EAYR K+ P++D+
Sbjct: 502 RKYNVKYNNDVTPEEMEAYRMKRVHHEDPMKDF 534
>At4g26380.1 68417.m03795 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 1016
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 57 ENRTCTACSCKPPMVQGWSSCSKIHQDYAKPDAEYRTQLHHILSPHIHT 203
E++ C AC P + SC++ + + A + ++HH + PH+ T
Sbjct: 762 EDKLCQAC-VMPIYFGNFYSCTQCNYILHEACANFSRKMHHPVHPHVLT 809
>At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative /
proton pump, putative similar to P-type
H(+)-transporting ATPase from [Phaseolus vulgaris]
GI:758250, [Lycopersicon esculentum] GI:1621440,
SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
tuberosum] GI:435001; contains InterPro accession
IPR001757: ATPase, E1-E2 type
Length = 949
Score = 28.3 bits (60), Expect = 2.1
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +1
Query: 40 RVVSDGRI---ELVLLVPVSLPWFRVGLLVPRYIRITQSQTQSIEHSSTT--SYPHTYIQ 204
+V+ DGR E +LVP L ++G +VP R+ + I+ S+ T S P T Q
Sbjct: 136 KVLRDGRWGEQEAAILVPGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPATKHQ 195
Query: 205 RDQ 213
D+
Sbjct: 196 GDE 198
>At4g29140.1 68417.m04170 MATE efflux protein-related several
hypothetical proteins - Arabidopsis thaliana; contains
Pfam profile PF01554: Uncharacterized membrane protein
family
Length = 532
Score = 27.5 bits (58), Expect = 3.7
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 7 SXVFGGRRFLLRVVSDGRIELVLLV---PVSLPWFRVG 111
S FG RF L ++ R + LLV P+S+ WF VG
Sbjct: 123 SQAFGAHRFKLLSLTLHRTVVFLLVCCVPISVLWFNVG 160
>At3g49200.1 68416.m05377 hypothetical protein
Length = 507
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 97 WFRVGLLVPRYIRITQSQTQSIEHSSTTSYPHTYI 201
W R ++V ++ I + QTQ IE+++ + +Y+
Sbjct: 90 WVRTNVVVEDHVIIPKIQTQHIENANADVFLESYV 124
>At2g44600.1 68415.m05552 expressed protein
Length = 313
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +3
Query: 84 CKPPMVQGWSSCSKIHQDYAKPDAEYRTQLHHILSPHIHTEGS 212
C P+V+ +CS + PD Y +L PH+ T S
Sbjct: 252 CLSPLVRAKPNCSSNWKAKFPPDFGYSGELKSPAKPHLSTAAS 294
>At5g66470.1 68418.m08382 expressed protein
Length = 427
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 133 RITQSQTQSIEHSSTTSYPHTYIQRDQSLMLLQ 231
R+T+S Q+ H+STTSY T + + L + Q
Sbjct: 37 RVTKSHLQA--HNSTTSYGRTELSSSKKLWIRQ 67
>At5g13250.1 68418.m01522 hypothetical protein
Length = 286
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 102 QGWSSCSKIHQDYAKPDAEYRTQ 170
QGW S H++ KPD ++R Q
Sbjct: 119 QGWLRLSLGHEEDVKPDLDHRQQ 141
>At3g23740.1 68416.m02985 expressed protein
Length = 542
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 126 IHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGS 245
++ + + PD E TQ+ H++ + GS+ SS L GS
Sbjct: 297 VNLEQSDPDKEQETQIKHVIPDTENNLGSEIPLSSPLVGS 336
>At3g04900.1 68416.m00532 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 208
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -2
Query: 153 RLALRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAP 19
RL P V+ K P P++ Y N + + +Y +++P P
Sbjct: 160 RLKYEEPKVTPRKPPAPYPFDYYENLGFPPSDSLFNYFSDDNPQP 204
>At2g07300.1 68415.m00837 hypothetical protein
Length = 219
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 93 PMVQGWSSCSKIHQDYAKPDAEYRTQLHHIL 185
P++ GW+ C I + Y K ++ +LH IL
Sbjct: 12 PLITGWTICVMILRIYKKMLNDHSFELHLIL 42
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,731,768
Number of Sequences: 28952
Number of extensions: 202889
Number of successful extensions: 570
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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