Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_pT_A02
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0012 - 5575574-5575849,5575889-5575954,5576103-5576926,557...    30   1.8  
04_04_0888 - 29098068-29098177,29098260-29098347,29099412-290994...    29   3.2  
04_04_1407 - 33345230-33345372,33345492-33345626,33346559-33346904     29   4.2  

>05_02_0012 -
           5575574-5575849,5575889-5575954,5576103-5576926,
           5577333-5577405,5577936-5577983
          Length = 428

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -2

Query: 580 RYYNSRKFMPAGLMFCLSVGMFTKLLLKNVGASRMPIKS 464
           RYYN +K  P G     +V +FT++ LKN+  + +P+KS
Sbjct: 42  RYYNYQKGQPYGAG-ANNVEIFTRVPLKNMMPASVPLKS 79


>04_04_0888 -
           29098068-29098177,29098260-29098347,29099412-29099450,
           29099722-29099786,29099863-29100082
          Length = 173

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 580 RYYNSRKFMPAGLMFCLSVG 521
           R YN+RK +P+GL+  LS+G
Sbjct: 140 RLYNTRKLVPSGLLLVLSLG 159


>04_04_1407 - 33345230-33345372,33345492-33345626,33346559-33346904
          Length = 207

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = -2

Query: 778 IGFAYAATVAAGGVMGYAK 722
           I  AYAA V AGG MGY K
Sbjct: 106 ITLAYAALVGAGGAMGYMK 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,131,043
Number of Sequences: 37544
Number of extensions: 302146
Number of successful extensions: 488
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)