Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P23
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...   163   1e-41
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...   160   1e-40
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    29   0.31 
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    28   0.95 
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    26   2.9  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   6.7  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score =  163 bits (397), Expect = 1e-41
 Identities = 75/108 (69%), Positives = 90/108 (83%)
 Frame = +2

Query: 47  APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRK 226
           AP    +KK KK+ ++INS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPPLRK
Sbjct: 8   APVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRK 67

Query: 227 SEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 370
           SE+EYYA+L++  VHHYSGNNI+LGTACGK +RV  LA+ D GDSDI+
Sbjct: 68  SELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score =  160 bits (388), Expect = 1e-40
 Identities = 73/104 (70%), Positives = 87/104 (83%)
 Frame = +2

Query: 59  VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIE 238
           V  KK KK+ ++IN++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PPLRKSE+E
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELE 63

Query: 239 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 370
           YYA+L+K  VHHY+G NI+LGTACGK +RV  LAITD GDSDI+
Sbjct: 64  YYAMLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 71  KQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 196
           ++KK I+     ++L   SGKYC G   T+  L++G  + ++
Sbjct: 279 QEKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEGAVETLL 318


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 179 KAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACG 313
           ++ +VI++K   P+RK  I+ +  L+  GVH    ++ EL   CG
Sbjct: 87  RSSIVILSKCFFPVRKDLIKIFGDLSSRGVHFL--DSPELANQCG 129


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = +2

Query: 47  APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 220
           APK +  KK  KT++  + +  ++        G K+ +K +R+G+  LVI+A +  P+
Sbjct: 33  APKKLN-KKMMKTVKKASKQKHILR-------GVKEVVKAVRKGEKGLVILAGDISPM 82


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 70  LCCNHFGSVNANESSPRAQMEK 5
           + C+H  S+NAN S+ RA M +
Sbjct: 146 VACDHEFSINANVSAARALMNR 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,726,115
Number of Sequences: 5004
Number of extensions: 32262
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)