Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P22
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    33   0.024
SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|...    26   3.7  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   3.7  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   4.9  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    25   6.4  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   6.4  

>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 33.5 bits (73), Expect = 0.024
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +3

Query: 387 ELIYKKLSVYASDLEVFARHARRCKIQGEDVKLLVRRNKSL 509
           EL +K++   A+DL  FA HA R  I  +DV LL++R + +
Sbjct: 416 ELFFKQI---ANDLSAFADHAHRKTIDTQDVVLLMKRQRKI 453


>SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 207

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 474 DVKLLVRRNKSLRSQLESRSPTAALKRKSSLAEDVF 581
           + K L+RR       LE+  P   +KR++ L  +VF
Sbjct: 38  NAKKLMRRFNDTMGDLENVGPAELIKRRAELLAEVF 73


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 249  YFEMSAFEDLSASQRLRAALKRD 317
            YFE  AFEDL  ++R    +KRD
Sbjct: 1119 YFEFDAFEDLVNTKRPVIYMKRD 1141


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 477 VKLLVRRNKSLRSQLESRSPTAALKRKSSLAEDVFEXASSN 599
           ++L+  +NK+ R    SR PT +   KSSL++ +   +S+N
Sbjct: 599 MQLVSSQNKNPRKTAISRKPTLSSMFKSSLSQLMTTVSSTN 639


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 351 IRELIPNRRLL--RPALTLHGAFAKQINLQKQTFRNKNNELHRIHVHTL 211
           +REL  N  LL  R A  +  AF+K  N+  QT R + NE+    V TL
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +2

Query: 158 VKIVLSVLPI*KNYVGIYRVCTCIRCSSLFLFRNVCF*RFICFAKAP 298
           + I+L+ L +    +G   +   +  ++ F F+++C   +ICF+  P
Sbjct: 253 LNILLNYLLVWHPTIGFGFLGAPVAVATTFWFQSICLILYICFSSTP 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,672
Number of Sequences: 5004
Number of extensions: 44986
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)