Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P22
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)                        30   1.3  
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               30   1.7  
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)                     29   3.8  
SB_28132| Best HMM Match : Peptidase_C1 (HMM E-Value=4.8e-09)          27   8.8  

>SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)
          Length = 165

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 197 YVGIYRVCTCIR-CSSLFLFRNVCF*RFICFAKAPCSVK 310
           Y   +RVC   R C S    ++ C  ++ C+ K  C VK
Sbjct: 30  YRSCHRVCRRYRYCKSFLFIKHKCHYKYHCYLKCSCKVK 68


>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -3

Query: 171  NTIFTEFQQVAATFNTQWL*AATSKLCY*SINVMRIAQCTAYXAVTSPHSVH 16
            NT+  ++ +        WL     K     ++V+R AQ   +  +T PHS+H
Sbjct: 1137 NTVSVDWDRPEVDSGKSWLLPIGGKYELEEVHVLRSAQLVLHPNITRPHSLH 1188


>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
 Frame = -1

Query: 251 IKITNYIVYMYTL--CRYLHS 195
           +KIT Y V MYT+  CRY+HS
Sbjct: 338 VKITVYAVVMYTVYACRYVHS 358


>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1230

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +3

Query: 372  MDLILELI---YKKLSVYASDLEVFARHARRCKIQGEDVKLLVRRNKSLRSQLE 524
            +D+I+EL     K  S  ASD E+FA  A+      + ++ L  +N  L+ QL+
Sbjct: 1031 LDVIVELKKNNQKLKSDLASDEEIFAEKAKEINNLNDRIRTLEEQNNCLKEQLK 1084


>SB_28132| Best HMM Match : Peptidase_C1 (HMM E-Value=4.8e-09)
          Length = 160

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 333 NRRLLRPALTLHGAFAKQINLQKQTFR 253
           N  LL+ AL  HG  A  +N  ++TFR
Sbjct: 27  NPTLLKFALATHGPIASSLNADQKTFR 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,383,192
Number of Sequences: 59808
Number of extensions: 330563
Number of successful extensions: 682
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)