Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P22
         (602 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U06458-1|AAC47347.1|  278|Drosophila melanogaster transcription ...    31   1.6  
L29540-1|AAA28488.1|  278|Drosophila melanogaster TAFII40 protein.     31   1.6  
AY061338-1|AAL28886.2|  274|Drosophila melanogaster LD26511p pro...    31   1.6  
AE014298-2613|AAF48767.3|  278|Drosophila melanogaster CG6474-PA...    31   1.6  

>U06458-1|AAC47347.1|  278|Drosophila melanogaster transcription
           initiation factorTFIID 42 kDa subunit protein.
          Length = 278

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 381 ILELIYKKLSVYASDLEVFARHARRCKIQGEDVKLL--VRRNKSLRSQLE 524
           +LE  ++ ++    D +V+A HAR+  I  +DV+L   V  +KS    LE
Sbjct: 45  LLEFTFRYVTCILDDAKVYANHARKKTIDLDDVRLATEVTLDKSFTGPLE 94


>L29540-1|AAA28488.1|  278|Drosophila melanogaster TAFII40 protein.
          Length = 278

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 381 ILELIYKKLSVYASDLEVFARHARRCKIQGEDVKLL--VRRNKSLRSQLE 524
           +LE  ++ ++    D +V+A HAR+  I  +DV+L   V  +KS    LE
Sbjct: 45  LLEFTFRYVTCILDDAKVYANHARKKTIDLDDVRLATEVTLDKSFTGPLE 94


>AY061338-1|AAL28886.2|  274|Drosophila melanogaster LD26511p
           protein.
          Length = 274

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 381 ILELIYKKLSVYASDLEVFARHARRCKIQGEDVKLL--VRRNKSLRSQLE 524
           +LE  ++ ++    D +V+A HAR+  I  +DV+L   V  +KS    LE
Sbjct: 41  LLEFTFRYVTCILDDAKVYANHARKKTIDLDDVRLATEVTLDKSFTGPLE 90


>AE014298-2613|AAF48767.3|  278|Drosophila melanogaster CG6474-PA
           protein.
          Length = 278

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 381 ILELIYKKLSVYASDLEVFARHARRCKIQGEDVKLL--VRRNKSLRSQLE 524
           +LE  ++ ++    D +V+A HAR+  I  +DV+L   V  +KS    LE
Sbjct: 45  LLEFTFRYVTCILDDAKVYANHARKKTIDLDDVRLATEVTLDKSFTGPLE 94


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,828,277
Number of Sequences: 53049
Number of extensions: 477689
Number of successful extensions: 961
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2462276481
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)