Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P22
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z82076-7|CAB04933.2|  291|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical
           protein Y59A8A.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +3

Query: 354 EITKPAMDLILELIYKKLSVYASDLEVFARHARRCKIQGEDVKLLVRRNKSLRSQLES 527
           ++ +  + +  E +  K  V +SDL ++   +    +   D+KL V  N + R  LES
Sbjct: 334 QVVETILQIKTECLQSKWFVTSSDLGIYGMLSAMATMSRADLKLQVSGNGTFRKLLES 391


>Z82076-7|CAB04933.2|  291|Caenorhabditis elegans Hypothetical
           protein W07G1.1 protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 469 GKMSSYW*DETNLYDLNLNRDPQQRPSSASHRSPKMYSXTHPP 597
           G    Y    T + D+N  +D Q   +S+SH +P  Y   H P
Sbjct: 74  GAKKLYTTSGTLVKDINKIKDGQNYVASSSHFTPAAYGGQHQP 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,795,930
Number of Sequences: 27780
Number of extensions: 254668
Number of successful extensions: 664
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)