Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P22
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50930.1 68418.m06316 hypothetical protein similar to unknown...    50   9e-07
At1g54140.1 68414.m06172 transcription initiation factor IID (TF...    32   0.25 
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD...    29   2.4  
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains...    28   5.5  
At5g08030.1 68418.m00934 glycerophosphoryl diester phosphodieste...    27   7.2  
At3g12300.1 68416.m01535 expressed protein                             27   7.2  
At2g29910.2 68415.m03633 F-box family protein contains F-box dom...    27   9.6  
At2g29910.1 68415.m03632 F-box family protein contains F-box dom...    27   9.6  

>At5g50930.1 68418.m06316 hypothetical protein similar to unknown
           protein (emb|CAB61034.1)
          Length = 242

 Score = 50.4 bits (115), Expect = 9e-07
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
 Frame = +3

Query: 348 GLEITKPAMDLILELIYKKLSVYASDLEVFARHARRCKIQGEDVKLLVRRN-------KS 506
           G+EI  P +  + +L +K     A DLE+FA HA R  +  +DV L   RN       +S
Sbjct: 144 GMEIGGPVVACVADLAFKYAENVAKDLELFAHHAGRKVVNMDDVVLSAHRNDNLAASLRS 203

Query: 507 LRSQLESRSPTAALKRKSSLAEDVFEXASSN 599
           L ++L+++ P +  KRK   A+   + +SSN
Sbjct: 204 LCNELKAKEPQSERKRKKGSAKKEDKASSSN 234


>At1g54140.1 68414.m06172 transcription initiation factor IID
           (TFIID) 31 kDa subunit (TAFII-31) family protein
           contains Pfam profile: PF02291 transcription initiation
           factor IID, 31kD subunit
          Length = 183

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 312 RDVTAV-CLESTLGLEITKP-AMDLILELIYKKLSVYASDLEVFARHARRCKIQGEDVKL 485
           RD   V  L  ++G+E  +P  +   LEL Y+ +    +D +V++ HA +  I  +DVKL
Sbjct: 11  RDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNIDCDDVKL 70

Query: 486 LVR 494
            ++
Sbjct: 71  AIQ 73


>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
           CDP-related similar to CCAAT displacement protein (CDP)
           (Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
           contains Pfam:PF00904 Involucrin repeat
          Length = 689

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 423 DLEVFARHARRCKIQGEDVKLLVRRNKSLRSQLESRSPTAALKRKSSLAED 575
           +LE F   A   K Q   ++ L  RN+ L  Q+E +       ++ +LAE+
Sbjct: 150 ELEEFRTEATHLKNQQATIRRLEERNRQLEQQMEEKIKEVVEIKQRNLAEE 200


>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 603

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 66  IAQCTAYXAVTSPHSVHR 13
           + +C A+  V SPHSVHR
Sbjct: 77  VQECDAHLIVLSPHSVHR 94


>At5g08030.1 68418.m00934 glycerophosphoryl diester
           phosphodiesterase family protein similar to
           glycerophosphodiester phosphodiesterase [Borrelia
           hermsii] GI:1399038; contains Pfam profile PF03009:
           Glycerophosphoryl diester phosphodiesterase family
          Length = 372

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 339 IPNRRLLRPALTLHGAFAKQINLQKQTFRNKNNELH 232
           + N RL+ P   +  A ++ + +   T+RN+N  LH
Sbjct: 292 VNNNRLMTPTDLVARAHSRNLQVHPYTYRNENQFLH 327


>At3g12300.1 68416.m01535 expressed protein
          Length = 190

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 225 VYDVVRYFYFEMSAFEDLSASQRLRAALKRDVTAV 329
           V D+ +YF FE+   +D +  +R RA+  + VT V
Sbjct: 80  VKDMKKYFSFEIQILDDKNVRRRFRASNFQAVTRV 114


>At2g29910.2 68415.m03633 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 335

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +1

Query: 172 ISFADLKKLCRYLQSVYMYTM*FVIFISKCLLLKIYLLRKGSVQR*SGT*QPSVWNQL 345
           + F  LK L   L +     M + +FIS C LL+ +LLR   ++       P VWN L
Sbjct: 147 VFFPKLKTLSLVLMTFVDSDM-YELFISGCPLLEEFLLRNDEIE------IPPVWNAL 197


>At2g29910.1 68415.m03632 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 352

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +1

Query: 172 ISFADLKKLCRYLQSVYMYTM*FVIFISKCLLLKIYLLRKGSVQR*SGT*QPSVWNQL 345
           + F  LK L   L +     M + +FIS C LL+ +LLR   ++       P VWN L
Sbjct: 147 VFFPKLKTLSLVLMTFVDSDM-YELFISGCPLLEEFLLRNDEIE------IPPVWNAL 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,944,081
Number of Sequences: 28952
Number of extensions: 230330
Number of successful extensions: 526
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)