Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P21
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    26   2.6  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   4.5  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   5.9  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   7.9  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  

>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 92  SLEQVIGLEGAFFYSFLGLIAPSILDLIFKWERGLGRNNWILFKDLFLIFFGCFVLVAGV 271
           S  Q +GL   FF SF  L+  +  +    + R +  N  ++    ++ F+  F  +A V
Sbjct: 188 STAQTVGLNTGFFLSFTILLVFTSPEFANTFIRSIPSNEGLITLSGYIKFWAYFTFIASV 247


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 173  IFKWERGLGRNNWILFKDLFLIFFGCFVLVAGVTQSIRE 289
            IF W +G  + + +    +++  FG F L+AGV   + E
Sbjct: 929  IFGWFKGGHQTSIVAVIRIWMYSFGIFCLIAGVYYILSE 967


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 131 YSFLGLIAPSILDLIFKWERGLGRNNWILFKD 226
           + FL L APS     F+ E G+    W+   D
Sbjct: 820 HKFLDLSAPSTNSKDFRSEAGIPERRWLYISD 851


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -3

Query: 258 STKQPKNIRNKSLNKIQLFLPRPRSHLKMRSSMDGAMRPRKE*KKAPSRPITCSRLGN 85
           S+ QP N+ N S N  + F+P  ++ +   +S   A++P K  K  P    + S +GN
Sbjct: 539 SSVQPTNLPNGSTNGTETFIPPVQNSI---TSNKEAVKPIKN-KPKPISFESLSAVGN 592


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 131 YSFLGLIAPSILDLIFKWERGLGRNNWILFKDLFLIFFGCFVLVAGVTQSI 283
           Y F    AP +  LIF    G     WI F  L +  +G ++ VA   +S+
Sbjct: 211 YYFNNYPAPQVFKLIFGGGEGFVLTPWIAF--LHMYMYGHYLHVAKNQKSL 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,471,150
Number of Sequences: 5004
Number of extensions: 27617
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)