Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_P21
(476 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019) 33 0.16
SB_56871| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_39013| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_58280| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 37.5 bits (83), Expect = 0.006
Identities = 24/98 (24%), Positives = 42/98 (42%)
Frame = +2
Query: 5 VAQKYHNITEXXXXXXXXXXXXXXXXTLPSLEQVIGLEGAFFYSFLGLIAPSILDLIFKW 184
V +++H I + +P L I L G+ S L L+ P + L+ +
Sbjct: 249 VGERFHGIADYGFRTLLVCVTCALALGIPQLSNFISLVGSIGSSALALVFPITIHLLTLY 308
Query: 185 ERGLGRNNWILFKDLFLIFFGCFVLVAGVTQSIREIIR 298
+ ++ KD+F++ FG V G+ SI I+R
Sbjct: 309 STHQLTIS-VIIKDVFILAFGLLGSVVGLYTSILNIVR 345
>SB_32123| Best HMM Match : Keratin_B2 (HMM E-Value=0.019)
Length = 1097
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 61 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 165
SY C +D+ K SYRPR + L++ S+ P HT
Sbjct: 197 SYRPCHADLVKQTLSYRPRHTDLVIQTLSYRPRHT 231
Score = 30.3 bits (65), Expect = 0.85
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 61 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 165
SY C +D+ SYRPR + L++ S+ P HT
Sbjct: 281 SYRPCHADLVIQTLSYRPRHTDLVIQTLSYRPCHT 315
Score = 30.3 bits (65), Expect = 0.85
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 61 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 165
SY C +D+ SYRPR + L++ S+ P HT
Sbjct: 691 SYRPCHTDLVIQTLSYRPRHTDLVIQTLSYRPCHT 725
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 64 YCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 165
Y C +D+ +SYRPR + L++ + P HT
Sbjct: 141 YRPCHTDLVMQTSSYRPRHTDLVIQTLLYRPCHT 174
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 61 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 165
SY C +D+ +SYRP + L++ S+ P HT
Sbjct: 357 SYRPCHTDLVIQTSSYRPCHTDLVIQTLSYRPCHT 391
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 61 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 165
SY C +D+ SYRP + L++ S+ P HT
Sbjct: 593 SYRPCNTDLVIQTLSYRPCHTDLVIQTLSYRPCHT 627
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 61 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 165
SY C +D+ +SYRP + L++ S+ P HT
Sbjct: 621 SYRPCHTDLVIQTSSYRPCHTDLVIQTLSYRPCHT 655
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 61 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 165
SY C +D+ +SYRP + L++ S+ P HT
Sbjct: 733 SYRPCHTDLVIQTSSYRPCHTDLVIQTLSYRPCHT 767
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 61 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 165
SY C +D+ +SYRP + L++ S+ P HT
Sbjct: 789 SYRPCHADLVIQTSSYRPCHTDLVIQTLSYRPCHT 823
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 61 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 165
SY C +D+ +SYRP + L++ S+ P HT
Sbjct: 267 SYRPCHTDLVIQTSSYRPCHADLVIQTLSYRPRHT 301
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 61 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 165
SY C +D+ SYRP + L++ S+ P HT
Sbjct: 635 SYRPCHTDLVIQTLSYRPCHTDLVIQTLSYRPCHT 669
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 61 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 165
SY C +D+ SYRP + L++ S+ P HT
Sbjct: 649 SYRPCHTDLVIQTLSYRPCHTDLVIQTLSYRPCHT 683
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 61 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 165
SY C +D+ SYRP + L++ S+ P HT
Sbjct: 663 SYRPCHTDLVIQTLSYRPCHTDLVIQTLSYRPCHT 697
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 61 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 165
SY C +D+ SYRP + L++ S+ P HT
Sbjct: 747 SYRPCHTDLVIQTLSYRPCHTDLVIQTLSYRPCHT 781
>SB_56871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 61 SYCGCGSDVTKS*TSYRPRRSFLLLLPWSHSPVHT 165
SY C +D+ + YRPR + L++ S+ P HT
Sbjct: 90 SYRPCYTDLVMQTSLYRPRHTDLVIQTLSYRPCHT 124
>SB_39013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 196 KTSFPLENEIQYGRGYETKEGVEESSF 116
KTS+ +NE+Q G E KE +E++S+
Sbjct: 19 KTSWNNDNELQNGEQSEEKENLEQNSY 45
>SB_58280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 97 KTW*RRCRNHSKSGKNRXHDCFRDVMV 17
K W R CRNH+++ ++C R V
Sbjct: 305 KPWQRSCRNHARADDYTDYNCKRKASV 331
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,600,811
Number of Sequences: 59808
Number of extensions: 188049
Number of successful extensions: 413
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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