Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P21
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   5.1  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   6.8  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   6.8  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   9.0  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 209 WILFKDLFLIFFGCFVLVAGV 271
           W+ F  LFLI +  + ++  V
Sbjct: 223 WVYFVPLFLIIYSYWFIIQAV 243


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 209 WILFKDLFLIFFGCFVLVAGV 271
           W+ F  LFLI +  + ++  V
Sbjct: 99  WVYFVPLFLIIYSYWFIIQAV 119


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 317 LLEATFYFNLFTN*YDFVNI 376
           LL  T+   L+++ YD+VNI
Sbjct: 13  LLTWTYAEELYSDKYDYVNI 32


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 317 LLEATFYFNLFTN*YDFVNI 376
           LL  T+   L+++ YD+VNI
Sbjct: 13  LLTWTYAEELYSDKYDYVNI 32


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +1

Query: 229 ISNIFWLF 252
           +SN+FWLF
Sbjct: 34  LSNLFWLF 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,556
Number of Sequences: 438
Number of extensions: 1712
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)