Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P21
         (476 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g25530.1 68414.m03170 lysine and histidine specific transport...    32   0.23 
At1g53440.1 68414.m06057 leucine-rich repeat family protein / pr...    29   1.6  
At1g53430.1 68414.m06056 leucine-rich repeat family protein / pr...    29   2.2  

>At1g25530.1 68414.m03170 lysine and histidine specific transporter,
           putative similar to lysine and histidine specific
           transporter GI:2576361 from [Arabidopsis thaliana];
           contains Pfam profile PF01490: Transmembrane amino acid
           transporter protein
          Length = 440

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = +2

Query: 83  TLPSLEQVIGLEGAFFYSFLGLIAPSILDLIFKWERGLGRNNWILFKDLFLIFFGCFVLV 262
           + P    ++G  G F ++      PSI+ LI K  R   R +   F +   I  G F+++
Sbjct: 363 SFPFFGDLLGFFGGFGFAPTSFFLPSIMWLIIKKPR---RFSVTWFVNWISIIVGVFIML 419

Query: 263 AGVTQSIREIIRTSS 307
           A     +R II  SS
Sbjct: 420 ASTIGGLRNIIADSS 434


>At1g53440.1 68414.m06057 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1035

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 91  KS*TSYRPRRSFLLLLPWSHSPVHTGS 171
           KS T+YRP+  F+ LL W++     GS
Sbjct: 866 KSNTNYRPKEEFIYLLDWAYVLQEQGS 892


>At1g53430.1 68414.m06056 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1030

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 91  KS*TSYRPRRSFLLLLPWSHSPVHTGS 171
           KS T+YRP+  F+ LL W++     GS
Sbjct: 860 KSNTNYRPKEEFVYLLDWAYVLQEQGS 886


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,517,857
Number of Sequences: 28952
Number of extensions: 140281
Number of successful extensions: 295
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)