Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P18
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)              134   6e-32
SB_36663| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_55031| Best HMM Match : GRP (HMM E-Value=5.3)                       28   6.2  
SB_25754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score =  134 bits (324), Expect = 6e-32
 Identities = 61/114 (53%), Positives = 83/114 (72%)
 Frame = +2

Query: 158 NNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAIIWFIL 337
           N K  +KE+ELLLQ+FSR+VSTKSS LFY NA IVSAIP+WLFWR+H ++  ++ I F +
Sbjct: 3   NGKKLSKEDELLLQNFSRSVSTKSSILFYANALIVSAIPLWLFWRIHQMDPYSSGILFAV 62

Query: 338 VTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKLADDKKMSRKEKDER 499
           +T  STWL+A AY+N KFQLKH             ++++L  +KK++R+EKDER
Sbjct: 63  MTLVSTWLVAFAYKNVKFQLKHKIAQRRDAAITKEVNQELDPNKKLTRQEKDER 116


>SB_36663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = -1

Query: 300 ECTLQNNQIGIAETIKAFP*KRADDFVDTFRLKSCNNNSSSFVKALLF-FPDIFTK*VTL 124
           E  +  +++G+A ++ A   +RAD+ +++  ++     S S VK +L   P+   K ++ 
Sbjct: 3   ESIVDASRLGVATSLSAETPRRADELIESANMERNKGKSRSQVKEMLLKVPEFIKKSISS 62

Query: 123 TFTNTNK 103
           T ++ ++
Sbjct: 63  TISDEDE 69


>SB_55031| Best HMM Match : GRP (HMM E-Value=5.3)
          Length = 487

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 97  AAFICVCKS*SNLFSKNVWKEQQSFYKRRRVIVARF*PECVHKIVCSLLRER 252
           AAF+C   +  NLF   + K  QS     + I+ R  P C+        R+R
Sbjct: 81  AAFLCHMSTQRNLFKPVIVKSNQSHKDTAKHILLRLHPACIRGFCLRHHRQR 132


>SB_25754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +2

Query: 5   RPMXFNFRSPAKXARKLTXXILXVVLPLNSTQLLFVFVKVKVT 133
           +P+  +F+  A  A ++   +L +++P+N+TQL   +V   +T
Sbjct: 380 KPLGLDFKGNA-AANEIMKEVLQLLMPINATQLAHGYVDGDIT 421


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,335,041
Number of Sequences: 59808
Number of extensions: 421164
Number of successful extensions: 959
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)