Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_P17
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 31 0.92
Z72502-7|CAA96592.1| 140|Caenorhabditis elegans Hypothetical pr... 30 1.2
U29097-8|AAA68415.1| 341|Caenorhabditis elegans Serpentine rece... 29 2.8
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 29 3.7
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 29 3.7
AC006717-1|AAY55883.2| 101|Caenorhabditis elegans Hypothetical ... 29 3.7
AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical... 28 4.9
Z83233-3|CAB05762.1| 83|Caenorhabditis elegans Hypothetical pr... 28 6.5
AL132952-25|CAB63388.1| 513|Caenorhabditis elegans Hypothetical... 27 8.6
AL132846-9|CAB63368.1| 513|Caenorhabditis elegans Hypothetical ... 27 8.6
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 33 QVPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATLPVRDDVS 188
++P K +P+RG P T + + SPQ+ T TLP V+
Sbjct: 247 RLPPAAKKPAPSRGRPSNKRQTTTTTTTTITSVSKSPQISDTNTLPTLPSVT 298
>Z72502-7|CAA96592.1| 140|Caenorhabditis elegans Hypothetical
protein C08B6.10 protein.
Length = 140
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 39 PSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRS 155
P+ P P++P AP R + TW+ + Q+ Q+ S
Sbjct: 30 PANPTPSNPVTAAPIRRQPTVIQTTWAPQIQQPQQQLES 68
>U29097-8|AAA68415.1| 341|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 28 protein.
Length = 341
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 497 HTHNRILEKRI*RH*Y*LNSLT*YFIKYIIIAHECILIFILN*CV 631
+ HN+I EKR+ + Y +NS + Y+ CI+IF CV
Sbjct: 207 YIHNKIREKRMVHNVYNINSRYKSYENYLATKSVCIVIFSQILCV 251
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = -2
Query: 533 VKYVFLIFDCVCVCVCLFHNYSNSHIFD 450
V++++++ VC+C+C+ YS SH+ D
Sbjct: 66 VRFLWVVVSLVCICLCM---YSFSHVKD 90
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = -2
Query: 533 VKYVFLIFDCVCVCVCLFHNYSNSHIFD 450
V++++++ VC+C+C+ YS SH+ D
Sbjct: 66 VRFLWVVVSLVCICLCM---YSFSHVKD 90
>AC006717-1|AAY55883.2| 101|Caenorhabditis elegans Hypothetical
protein Y14H12A.2 protein.
Length = 101
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 177 DDVSLLMLHSIHVYFK*FIRLFNFH*FSTC-QPVFDDSYYVTTI 305
DD +++L+ +H+ F+R+ N F +C Q F D+ + T+
Sbjct: 33 DDDPIILLNCVHLLVLHFVRICNISSFKSCFQTWFSDNCWSCTV 76
>AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical
protein Y87G2A.13 protein.
Length = 468
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 527 YVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYD 426
Y L + C+C+ VCLF Y+ S +++YI + D
Sbjct: 101 YTSLHWLCLCIPVCLF-VYTLSEVYNYIMPDNRD 133
>Z83233-3|CAB05762.1| 83|Caenorhabditis elegans Hypothetical
protein K06B4.3 protein.
Length = 83
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = -2
Query: 524 VFLIFDCVCVCVCLF---HNYSNS-HIFDYIKKHS 432
VF++ C C C CLF +N++NS + +D I S
Sbjct: 48 VFIVCCCCCCCGCLFRSNNNFNNSNNSYDNISNDS 82
>AL132952-25|CAB63388.1| 513|Caenorhabditis elegans Hypothetical
protein Y51H4A.25a protein.
Length = 513
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 542 TNVVKYVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYDIERLNIH 405
T + KY+ L F +C+C+F+ S + D + D ++ I+
Sbjct: 44 TKLPKYLLLFFGSTVICLCIFY-ISRPQLNDNFDPNISDKRKIRIY 88
>AL132846-9|CAB63368.1| 513|Caenorhabditis elegans Hypothetical
protein Y51H4A.25a protein.
Length = 513
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 542 TNVVKYVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYDIERLNIH 405
T + KY+ L F +C+C+F+ S + D + D ++ I+
Sbjct: 44 TKLPKYLLLFFGSTVICLCIFY-ISRPQLNDNFDPNISDKRKIRIY 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,228,744
Number of Sequences: 27780
Number of extensions: 224542
Number of successful extensions: 670
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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