Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P17
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.9  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   3.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   5.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 21  KWLYQVPSEPKPTSPARGAP 80
           +W+ ++P+   PTS   G+P
Sbjct: 357 RWMMEIPNVTLPTSTYSGSP 376


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 68  SRRTLPINERGSGGDVVAKEPKTQPSG 148
           +RR    + RG+GG    K P+T  SG
Sbjct: 3   TRRVKRSDGRGNGGTPEEKRPRTAFSG 29


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 123 KNQKLSPQVRSTATLPVRDDVSLLMLHSIH 212
           +N    PQ  + AT+P+     + M+H +H
Sbjct: 301 RNGLAFPQRETGATVPLHMQKYVQMIHDLH 330


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 336 IVITCENKFSKSWLH 292
           I+ITC  + SKS +H
Sbjct: 60  ILITCRKRVSKSRIH 74


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 123 KNQKLSPQVRSTATLPVRDDVSLLMLHSIH 212
           +N    PQ  + AT+P+     + M+H +H
Sbjct: 301 RNGLAFPQRETGATVPLHMQKYVQMIHDLH 330


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 88  DRQGAPRAGEVGFGSEG 38
           D  G P   E+GF +EG
Sbjct: 206 DHYGVPTLEELGFDTEG 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,955
Number of Sequences: 438
Number of extensions: 2879
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)