Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P17
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family pr...    31   0.65 
At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family pr...    30   1.5  
At1g80850.1 68414.m09485 methyladenine glycosylase family protei...    29   2.0  
At5g17160.1 68418.m02010 expressed protein                             29   3.4  
At4g17800.1 68417.m02656 DNA-binding protein-related contains Pf...    27   7.9  
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea...    27   7.9  

>At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 307

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = -1

Query: 120 ATTSPPEPRSLIGRVRREQ--ERLALAQKVLGRAT 22
           ATTSP +P+SL  + RRE+  ERL + Q+++   T
Sbjct: 204 ATTSPKDPQSLAAKNRRERISERLKVLQELVPNGT 238


>At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 298

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -1

Query: 117 TTSPPEPRSLIGRVRREQ--ERLALAQKVLGRAT 22
           TTSP +P+SL  + RRE+  ERL + Q+++   T
Sbjct: 199 TTSPKDPQSLAAKNRRERISERLKILQELVPNGT 232


>At1g80850.1 68414.m09485 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 327

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 23  VALPSTF*AKANLSCSRRTLPINERGSGGDVVAKEPKTQPSGSIDRNLTSTR 178
           +++ +++ + A+ SC    L +    SG  V+ +      S S+ RNLT  R
Sbjct: 70  ISMTASYSSDASSSCESSPLSMTSTSSGKRVLRRSGSVSSSSSLRRNLTEER 121


>At5g17160.1 68418.m02010 expressed protein
          Length = 569

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 42  SEPKPTSPARGAPCRSTNEALAETWSQKN 128
           +EP+P+S      CRST+++LA    Q+N
Sbjct: 80  AEPQPSSQLVSRSCRSTSKSLAGDMDQEN 108


>At4g17800.1 68417.m02656 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 292

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 98  GSGGDVVAKEPKTQPSGS 151
           G GGDVV + P+ +P GS
Sbjct: 74  GGGGDVVGRRPRGRPPGS 91


>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to WDR protein, form B (GI:14970593) [Mus
           musculus]
          Length = 1589

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 3   AGRWGCKWLYQVPSEPKPTSPARGAP 80
           +GRW   +  +VP  P P  P RG P
Sbjct: 564 SGRWMKGYHLKVPPPPLPPQPPRGGP 589


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,180,124
Number of Sequences: 28952
Number of extensions: 197622
Number of successful extensions: 521
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)