Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P14
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.56 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.0  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.0  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 50  K*AEQGVLKNHTGIKRKRRWQTRKNT 127
           K A +   KN TG++R R W +  NT
Sbjct: 343 KLARKQFQKNTTGLERSRSWSSLDNT 368


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 633 TFXNIGMSFPTVYVLRHSRQHGVARCQFHYTHSYV 529
           TF NI     TVYVLR  +  GV R      +SY+
Sbjct: 262 TFENILSHINTVYVLRTKK--GVMRVDASEEYSYL 294


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 633 TFXNIGMSFPTVYVLRHSRQHGVARCQFHYTHSYV 529
           TF NI     TVYVLR  +  GV R      +SY+
Sbjct: 262 TFENILSHINTVYVLRTKK--GVMRVDASEEYSYL 294


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 310 IFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVM 426
           IF +SKSLR   N+    + + D+ +   MP  ++ + M
Sbjct: 81  IFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFM 119


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 310 IFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVM 426
           IF +SKSLR   N+    + + D+ +   MP  ++ + M
Sbjct: 81  IFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFM 119


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 634 AIFQAAVSSXEXHGYVMDLGIP 699
           ++ QAA SS     Y+++LG P
Sbjct: 408 SVIQAATSSVSDDLYLLELGFP 429


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 310 IFLSSKSLRPGINLLGRVIHVSD 378
           IFLS+KSLR   NL    + +SD
Sbjct: 42  IFLSTKSLRTPSNLFVINLAISD 64


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 121 LPRLPSSFTLNSRVIL*NTLFS 56
           LP LPS+ T NS+  L + LF+
Sbjct: 675 LPSLPSTLTKNSKQGLFSKLFA 696


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 121 EYFPRGGKKPT 153
           E FPRGG  PT
Sbjct: 148 ESFPRGGSLPT 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,686
Number of Sequences: 438
Number of extensions: 3321
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)