Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P14
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei...    36   0.028
At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein ...    30   1.8  
At5g51670.1 68418.m06406 expressed protein contains Pfam domain ...    29   4.2  
At4g39880.1 68417.m05650 ribosomal protein L23 family protein co...    28   5.6  
At4g29750.1 68417.m04237 expressed protein contains Pfam domain,...    28   5.6  
At4g32940.1 68417.m04687 vacuolar processing enzyme gamma / gamm...    28   7.3  
At5g04895.1 68418.m00514 helicase domain-containing protein simi...    27   9.7  
At2g40113.1 68415.m04932 hypothetical protein                          27   9.7  

>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
           similar to SP|Q05022 rRNA biogenesis protein RRP5
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00575: S1 RNA binding domain
          Length = 1838

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 17/52 (32%), Positives = 32/52 (61%)
 Frame = +1

Query: 316 LSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAY 471
           +++K++ PG+ LLG V  V+   I +S+P  L G V A  +S+  ++ +E +
Sbjct: 120 ITTKNISPGMKLLGVVTEVNQKDIVISLPGGLRGLVRASEVSDFTDRGIEVF 171



 Score = 32.3 bits (70), Expect = 0.34
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 637 IFQAAVSSXEXHGYVMDLGIPNTTAFLPXKD 729
           +F A V S E HG ++  G+P+ T F+   D
Sbjct: 170 VFSANVKSIEDHGSILHFGLPSITGFIEISD 200


>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 449

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 346 NLLGRVIHVSDVKIKVSMPCKLLGNVMACHISES 447
           N  GRV H   VK+++  PC        C + ES
Sbjct: 386 NYKGRVDHKKIVKVRIQKPCMYFNRPKGCRMGES 419


>At5g51670.1 68418.m06406 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668)
          Length = 474

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 415 GNVMACHISESYNKLLEAYVEDKTEKVRELSQM 513
           G VM C  +E+ NK +E YV   T   RE+ +M
Sbjct: 137 GWVMNCKDTEAKNKKIERYVSVTTALYREMEEM 169


>At4g39880.1 68417.m05650 ribosomal protein L23 family protein
           contains Pfam profile  PF00276: ribosomal protein L23
          Length = 178

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 340 GINLLGRVIHVSDVKIKVSMPCKL 411
           G  L GRV+H +++ IK+ MP KL
Sbjct: 2   GSRLGGRVVHFANLPIKLLMPAKL 25


>At4g29750.1 68417.m04237 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 776

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 107 WQTRKNTFREVERSLPVHILSRL 175
           W+TRK+   E ER +P H L RL
Sbjct: 230 WRTRKSNTVEAERIVPEHELKRL 252


>At4g32940.1 68417.m04687 vacuolar processing enzyme gamma /
           gamma-VPE nearly identical to SP|Q39119 Vacuolar
           processing enzyme, gamma-isozyme precursor (EC 3.4.22.-)
           (Gamma-VPE) {Arabidopsis thaliana}
          Length = 494

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 241 GDDGYLSDEAQDYLKTHKLNNNLIFLSSKSLRP 339
           GD G   D    Y+ T+  N+N  F  + SL+P
Sbjct: 315 GDVGISKDNLDLYMGTNPANDNFTFADANSLKP 347


>At5g04895.1 68418.m00514 helicase domain-containing protein similar
           to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
           GI:5881579;contains Pfam profiles PF04408: Helicase
           associated domain (HA2), PF00271: Helicase conserved
           C-terminal domain, PF00035: Double-stranded RNA binding
           motif
          Length = 581

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 433 HISESYNKLLEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGN 567
           +++ESY KL E   +   +K      + K G+Y+ ++V EL  G+
Sbjct: 404 NLAESYVKLKEELDKLLQKKANPSMDIHKEGKYLMLAVQELVAGD 448


>At2g40113.1 68415.m04932 hypothetical protein
          Length = 144

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 71  LKNHTGIKRKRRW-QTRKNTFREVERSLPVHI 163
           +K HTG+K++ +W ++  N F E    LP H+
Sbjct: 41  IKCHTGLKQRSKWIKSVTNDFGEFVIHLPSHL 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,009,571
Number of Sequences: 28952
Number of extensions: 261972
Number of successful extensions: 653
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)