Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P13
         (425 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    27   0.076
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   2.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   2.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   2.9  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   6.6  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   6.6  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   6.6  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 27.1 bits (57), Expect = 0.076
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 156 VVAVTRVDLLRSC-QSYNEDGEQNEQFREHFEQFSK 52
           ++ V R +L++ C + + E  E  + +++ +EQFSK
Sbjct: 397 ILKVIRKNLVKKCLELFEELAEDKDGYKKFYEQFSK 432


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 69  NVRETVHSVRRPRCSSGKT 125
           N RE+  S+ +PRC SG++
Sbjct: 85  NSRESSDSLVQPRCPSGES 103


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 113 LWQDLNRSTLVTATTITDIRIQATSVIPDTVP 208
           ++  LNRS+  TAT I    +   +V  +T+P
Sbjct: 244 MYPHLNRSSPTTATAIASATVTIQNV-SNTIP 274


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 113 LWQDLNRSTLVTATTITDIRIQATSVIPDTVP 208
           ++  LNRS+  TAT I    +   +V  +T+P
Sbjct: 192 MYPHLNRSSPTTATAIASATVTIQNV-SNTIP 222


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 113 LWQDLNRSTLVTATTITDIRIQATSVIPDTVP 208
           ++  LNRS+  TAT I    +   +V  +T+P
Sbjct: 375 MYPHLNRSSPTTATAIASATVTIQNV-SNTIP 405


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 250 CMERQHSHR 224
           CME QH HR
Sbjct: 156 CMEYQHLHR 164


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 250 CMERQHSHR 224
           CME QH HR
Sbjct: 156 CMEYQHLHR 164


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 250 CMERQHSHR 224
           CME QH HR
Sbjct: 156 CMEYQHLHR 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,889
Number of Sequences: 336
Number of extensions: 1041
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9490410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)