Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P12
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    25   7.3  
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    24   9.7  

>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 105 TTNRPRXGGAKTGTXSPQSAGDEEEKEND 19
           +T  PR  G ++ +   +   +EEE+EN+
Sbjct: 297 STAEPRAAGEESASEEEEEEEEEEEEENE 325


>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 267 RDILN*AYKIRDVPGNTGRLATLNXHVTPAWPGVGKCGARTFQLA 133
           +D ++  Y+   +PG    LATLN    P   G+   GA    LA
Sbjct: 253 KDKVHQPYRASLIPGLQNILATLNPDTQPGLCGICLSGAGPTVLA 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,353,350
Number of Sequences: 5004
Number of extensions: 22637
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)