Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P12
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0760 - 22888636-22889407,22889503-22889769,22890001-228903...    29   2.4  
02_01_0503 + 3669758-3670059,3670351-3670870                           27   7.3  
03_05_0714 - 27076881-27077218,27077332-27077482,27077768-270779...    27   9.6  

>12_02_0760 -
           22888636-22889407,22889503-22889769,22890001-22890302,
           22890402-22890512,22890990-22891568,22892026-22892087,
           22892434-22892754,22893434-22893776
          Length = 918

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 82  AXSRPVCGXNGRPYSNRCQ 138
           A  RPV G  GRPY  RC+
Sbjct: 295 ATRRPVLGGRGRPYPRRCR 313


>02_01_0503 + 3669758-3670059,3670351-3670870
          Length = 273

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 112 RWXHKQAEXRRCKDRHXQPPKCRR--RGGKR 26
           RW  + +  RR  DR  +   CRR  RGG+R
Sbjct: 126 RWWQQVSPSRRAADRRGRHLACRRWGRGGRR 156


>03_05_0714 -
           27076881-27077218,27077332-27077482,27077768-27077903,
           27078309-27078457,27079141-27079267,27080033-27080172,
           27080264-27080329,27080760-27080901,27081021-27081115,
           27081640-27082140
          Length = 614

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 135 APVAVRPAVGTTNRPRXGGAKTGTXSPQSAGDEEEKEND 19
           +P A   A  TT+ P  GG         S+  EE++E+D
Sbjct: 108 SPTAAAAAAATTDYPHEGGEAEQEGGNASSPCEEQEEDD 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,561,211
Number of Sequences: 37544
Number of extensions: 175562
Number of successful extensions: 490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)