Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_P12
(460 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 36 0.011
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 32 0.23
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 32 0.23
AF022976-11|AAC69080.1| 196|Caenorhabditis elegans Serpentine r... 28 2.8
Z73098-10|CAA97336.2| 391|Caenorhabditis elegans Hypothetical p... 27 5.0
U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical pr... 27 5.0
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 27 6.6
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 27 6.6
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 27 8.7
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 36.3 bits (80), Expect = 0.011
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = +1
Query: 70 CLCTAXSRPVCGXNGRPYSNRCQLKCARAT-----FAYAGPC 180
C C + RPVCG + Y+N C L+C + T F Y G C
Sbjct: 19 CDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTC 60
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Frame = +1
Query: 76 CTAXSRPVCGXNGRPYSNRCQLK---CARAT----FAYAGPC 180
C P+CG NG ++N C L+ C A AY G C
Sbjct: 772 CDNSYDPLCGTNGVTFTNACSLQKEICESANSTIEVAYTGMC 813
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 31.9 bits (69), Expect = 0.23
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 76 CTAXSRPVCGXNGRPYSNRCQLKCA 150
CT + VCG +G+ YSN C+L+ A
Sbjct: 468 CTDEFKEVCGSDGKTYSNECRLQNA 492
Score = 31.5 bits (68), Expect = 0.30
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 76 CTAXSRPVCGXNGRPYSNRCQLKCA 150
CT S VCG +G+ Y N C LK A
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLKLA 347
Score = 30.7 bits (66), Expect = 0.53
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 76 CTAXSRPVCGXNGRPYSNRCQLK 144
C RPVC NG + N C++K
Sbjct: 397 CEDVMRPVCATNGETFDNECEMK 419
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Frame = +1
Query: 43 ACTLGAXS---ACLCT----AXSRPVCGXNGRPYSNRCQL 141
AC GA AC C + + P+CG +G Y+N+C L
Sbjct: 669 ACYFGATCHNWACTCPTCNLSSNYPICGSDGIVYNNQCHL 708
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 97 VCGXNGRPYSNRCQLK 144
VCG +G YSN C+LK
Sbjct: 880 VCGSDGTTYSNLCELK 895
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 31.9 bits (69), Expect = 0.23
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 76 CTAXSRPVCGXNGRPYSNRCQLKCA 150
CT + VCG +G+ YSN C+L+ A
Sbjct: 476 CTDEFKEVCGSDGKTYSNECRLQNA 500
Score = 31.5 bits (68), Expect = 0.30
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 76 CTAXSRPVCGXNGRPYSNRCQLKCA 150
CT S VCG +G+ Y N C LK A
Sbjct: 331 CTMNSAHVCGTDGKTYLNECFLKLA 355
Score = 30.7 bits (66), Expect = 0.53
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 76 CTAXSRPVCGXNGRPYSNRCQLK 144
C RPVC NG + N C++K
Sbjct: 405 CEDVMRPVCATNGETFDNECEMK 427
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 97 VCGXNGRPYSNRCQLK 144
VCG +G YSN C+LK
Sbjct: 819 VCGSDGTTYSNLCELK 834
>AF022976-11|AAC69080.1| 196|Caenorhabditis elegans Serpentine
receptor, class w protein108 protein.
Length = 196
Score = 28.3 bits (60), Expect = 2.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 300 SIIIVLVFINMLKINKECHYI 362
S+ +++VF ++L IN CH+I
Sbjct: 128 SVDVIIVFASLLTINSTCHFI 148
>Z73098-10|CAA97336.2| 391|Caenorhabditis elegans Hypothetical
protein T21C9.9 protein.
Length = 391
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +1
Query: 22 VLFFLLVACTL--GAXSACLCTAXSRPVCGXNGRPYSN 129
++FF + TL G + C C P CG G YS+
Sbjct: 1 MIFFSVALTTLLVGLSNGCFCPPVISPSCGCGGGGYSS 38
>U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical
protein ZK813.6 protein.
Length = 251
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Frame = +1
Query: 64 SACLCTAXSRPVCGXNGR---PYSNRCQLKCAR 153
S C C PVC G YSN+C +CA+
Sbjct: 23 STCSCKPEIDPVCVREGPYQYTYSNKCVFQCAQ 55
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 40 VACTLGAXSACLCTAXSRPVCGXNGRPYSN 129
+AC GA SA C S+P CG P S+
Sbjct: 15 LACIGGAGSAGGCCPPSQPSCGGGAPPCSS 44
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform a protein.
Length = 393
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 40 VACTLGAXSACLCTAXSRPVCGXNGRPYSN 129
+AC GA SA C S+P CG P S+
Sbjct: 15 LACIGGAGSAGGCCPPSQPSCGGGAPPCSS 44
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 108 QRQALQQQVPTEMCARHICLRRAMR 182
Q Q ++ Q+ TEMC +CLR R
Sbjct: 3616 QSQRMRYQLITEMCTTGVCLRGECR 3640
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 108 QRQALQQQVPTEMCARHICLRRAMR 182
Q Q ++ Q+ TEMC +CLR R
Sbjct: 3616 QSQRMRYQLITEMCTTGVCLRGECR 3640
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 108 QRQALQQQVPTEMCARHICLRRAMR 182
Q Q ++ Q+ TEMC +CLR R
Sbjct: 3616 QSQRMRYQLITEMCTTGVCLRGECR 3640
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,958,796
Number of Sequences: 27780
Number of extensions: 149570
Number of successful extensions: 510
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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