Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P12
         (460 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03130.1 68417.m00426 BRCT domain-containing protein contains...    36   0.010
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    27   6.1  

>At4g03130.1 68417.m00426 BRCT domain-containing protein contains
           Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 765

 Score = 36.3 bits (80), Expect = 0.010
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 148 HISVGTCCCKACRWXHKQAEXRRCKDRHXQPPK 50
           ++SV TC    C W H +A+  R   RH  PP+
Sbjct: 428 NVSVKTCLLNLCEWRHPRAKRSRLMQRHHVPPR 460


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1406

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 45   LHFGGXKCLSLHRRFSACLWXQRQALQQQVP 137
            +HF      S   +F ACLW Q ++  + VP
Sbjct: 1122 IHFSTKYSQSYLSQFQACLWKQHKSYWRNVP 1152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,342,955
Number of Sequences: 28952
Number of extensions: 127977
Number of successful extensions: 288
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)