Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_P11
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 269 2e-73
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.39
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 27 1.6
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 26 3.7
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 3.7
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 3.7
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 4.8
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 26 4.8
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 26 4.8
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 6.4
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 25 6.4
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 6.4
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 8.5
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 8.5
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 269 bits (659), Expect = 2e-73
Identities = 121/186 (65%), Positives = 152/186 (81%)
Frame = +3
Query: 42 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 221
FLFTSESVGEGHPDK+CDQISDAILDA L DP +KVACET +KTGMV++ GEIT+++ +
Sbjct: 5 FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64
Query: 222 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 401
DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H + EE+GAGDQG+
Sbjct: 65 DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGI 124
Query: 402 MFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPXSKTQVTCEYVFAGGATVP 581
MFGYATDET E +PLT++LAHKLN ++ RR+G W RP +KTQVT EY GA +P
Sbjct: 125 MFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIP 184
Query: 582 QXVHTV 599
+ V T+
Sbjct: 185 RRVDTI 190
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.5 bits (63), Expect = 0.39
Identities = 39/144 (27%), Positives = 64/144 (44%)
Frame = -2
Query: 457 STTVNGMHSSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHVL*SKPL 278
S++ + SVSS + +P TSSS+L S + + SS+S TL S L
Sbjct: 179 SSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT---SSSL 235
Query: 277 DESS*PICLTVSRTTF**STLALDVISPHKSTIPVLVMVSHATFASGS*FRCASRIASLI 98
SS P + S +T S + S S+ ++S ++ +S S +S I+S
Sbjct: 236 STSSIPSTSSSSSSTS-SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISS-- 292
Query: 97 WSHILSG*PSPTDSDVNKNTDPXS 26
S S P+ T S ++ ++ S
Sbjct: 293 -SSSSSSSPTSTSSTISSSSSSSS 315
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 27.5 bits (58), Expect = 1.6
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = +3
Query: 15 SYDMEXGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLC 194
S+D E S+F S+SV E CD+ SD L K E L+
Sbjct: 657 SFDSEADSLFEEASKSVPEDPVSVFCDEESDESLRLRAE-----KTLVENALSENFTLML 711
Query: 195 GEITSKANV 221
G+ TS+ ++
Sbjct: 712 GQSTSEESL 720
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 92 RPNKRRYSRRAPESGSGRKSCM 157
+P KR+Y+R+AP S R++ +
Sbjct: 1211 QPTKRKYNRKAPTKSSTRQTTL 1232
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 98 LVAHFVWMTLANRFRCEQKY*SXFHII 18
L+ HFVW + CE+K+ S H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 78 PDKMCDQISDAILDA-HLNQDPDAKVACETITKTGM 182
P K ++ D ++ + H N DPDAK+A ++K M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -1
Query: 314 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 189
EH+ C+ + G ++++ DR + I +S C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -2
Query: 535 VFEXGLAHQ--NSPFRLSSAIF*LSLCASTTVNGMHSSVSSV 416
+F G A++ N+PF +S +++ S +T ++G+H V ++
Sbjct: 184 LFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTI 225
>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 210 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 329
+ N DY K+ E VK G D+ K C ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Frame = -1
Query: 524 WSCPPKFSISPELCNFLIEF---------VCKHYSQRHAFFCLICCITEHQAL 393
W C PK ++ C FL F KH ++R C C + HQ+L
Sbjct: 46 WVCDPKLQVAVRECLFLFSFQNDNEYLVWFKKHLNER-LQLCPKCIVKYHQSL 97
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -2
Query: 505 SPFRLSSAIF*LSLCASTTVN--GMHSSVSSVA*PNIKPWSPAPTSSSFLFS 356
+P+ + +F +S+ S+T G+ S+ + + P SP+ + S+FLF+
Sbjct: 206 NPWAAGTQLFLVSVLQSSTGERVGLSGSIDMLKDEYLSPQSPSFSKSNFLFA 257
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 345 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 226
Q +V V + + CM+ +QSL + HN ++ F+ +L D
Sbjct: 61 QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 259 ICLTVSRTTF**STLALDVISPHKSTIPVLVMVSHATFASGS*FRC 122
I L++ TF + LD++ HK+ P +V A F GS F C
Sbjct: 351 IRLSLEEATFNQIIMELDIL--HKAVSPYIVDFYGAFFVEGSVFIC 394
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 521 TXFKNTGYLRICICWWCNSPTXSSYC 598
T N GYLR C+ + NSP C
Sbjct: 252 TYLHNNGYLRKCLTFVPNSPERCIRC 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,725
Number of Sequences: 5004
Number of extensions: 57893
Number of successful extensions: 186
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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