Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_P11
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 244 4e-65
01_03_0090 - 12347165-12348349 241 2e-64
01_02_0051 - 10655867-10657057 241 3e-64
10_06_0022 - 9716537-9716649,9716709-9716826,9716958-9717076,971... 31 0.93
12_02_0655 + 21588662-21589051 30 1.2
10_06_0023 - 9727326-9727438,9727835-9727903,9727965-9728082,972... 29 3.8
06_03_1153 - 28047125-28047751 28 5.0
04_03_0847 - 20254736-20254933,20256127-20256201,20257538-202577... 28 6.6
11_01_0460 + 3561490-3564104,3564162-3564558 27 8.7
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 27 8.7
>05_01_0264 + 2030080-2031270
Length = 396
Score = 244 bits (597), Expect = 4e-65
Identities = 116/188 (61%), Positives = 143/188 (76%), Gaps = 2/188 (1%)
Frame = +3
Query: 42 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 221
FLFTSESV EGHPDK+CDQ+SDA+LDA L +DPD+KVACET TKT MV++ GEIT+KANV
Sbjct: 7 FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANV 66
Query: 222 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 395
DY+K+VRET ++IG+ + G D C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 67 DYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 126
Query: 396 GLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPXSKTQVTCEYVFAGGAT 575
G MFGYATDET E MPL+ VLA KL ++ E+R+NG W RP KTQVT EY GA
Sbjct: 127 GHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNESGAR 186
Query: 576 VPQXVHTV 599
VP VHTV
Sbjct: 187 VPVRVHTV 194
>01_03_0090 - 12347165-12348349
Length = 394
Score = 241 bits (591), Expect = 2e-64
Identities = 115/188 (61%), Positives = 141/188 (75%), Gaps = 2/188 (1%)
Frame = +3
Query: 42 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 221
FLFTSESV EGHPDK+CDQ+SDA+LDA L QDPD+KVACET TKT MV++ GEIT+KA V
Sbjct: 6 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATV 65
Query: 222 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 395
DY+K+VR+T + IG+ G D C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 66 DYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 125
Query: 396 GLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPXSKTQVTCEYVFAGGAT 575
G MFGYATDET E MPL+ VLA KL ++ E+R+NG W RP KTQVT EY+ GA
Sbjct: 126 GHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYLNDAGAM 185
Query: 576 VPQXVHTV 599
VP VHTV
Sbjct: 186 VPVRVHTV 193
>01_02_0051 - 10655867-10657057
Length = 396
Score = 241 bits (590), Expect = 3e-64
Identities = 115/188 (61%), Positives = 143/188 (76%), Gaps = 2/188 (1%)
Frame = +3
Query: 42 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 221
FLFTSESV EGHPDK+CDQISDA+LDA L +DP++KVACET TKT MV++ GEIT+KANV
Sbjct: 7 FLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEITTKANV 66
Query: 222 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 395
DY+K+VR+T + IG+ + G D + C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 67 DYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 126
Query: 396 GLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPXSKTQVTCEYVFAGGAT 575
G MFGYATDET E MPL+ VLA KL ++ E+R+NG W RP KTQVT EY GA
Sbjct: 127 GHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQNDNGAM 186
Query: 576 VPQXVHTV 599
VP VHTV
Sbjct: 187 VPLRVHTV 194
>10_06_0022 -
9716537-9716649,9716709-9716826,9716958-9717076,
9717238-9717476,9717793-9717849,9717933-9718019,
9718185-9718729,9718836-9719102
Length = 514
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 150 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 311
+ C +I+K GM+L IT + D+ K VR+ KH GY KG +K+ + M
Sbjct: 444 LVCGSISKVGMLLF---ITLRT--DWGKEVRKPSPYKHFGYHGKRKGLQFKSSNSM 494
>12_02_0655 + 21588662-21589051
Length = 129
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 68 RGSSRQNVRPNKRRYSRRAPESGSGRK 148
RGS V P +RR SRR P SG R+
Sbjct: 45 RGSVAVGVAPGRRRESRRRPGSGEARR 71
>10_06_0023 -
9727326-9727438,9727835-9727903,9727965-9728082,
9728232-9728350,9728506-9728695
Length = 202
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 150 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 311
+ C +I+K GM+L IT + D+ K V++ KH GY KG +K + M
Sbjct: 109 IVCGSISKVGMLLF---IT--LHTDWGKEVQKASPCKHFGYHAERKGLQFKYSNSM 159
>06_03_1153 - 28047125-28047751
Length = 208
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 44 FVHIGICWRG-SSRQNVRPNKRRYSRRAPESGSGRKSCM*NHN*NRYGA 187
+++ CW+ ++ P Y R P +G GR +H+ + YGA
Sbjct: 106 YIYRSQCWKSLKKKKKPPPPLPLYRPRPPPAGDGRPDVTVHHHHHHYGA 154
>04_03_0847 -
20254736-20254933,20256127-20256201,20257538-20257717,
20257802-20257869,20258563-20259125,20259198-20259235
Length = 373
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 491 ELCNFLIEFVCKHYSQRHAFFC 426
E+ +FL+ +H +QRHAF C
Sbjct: 87 EVIDFLLALPSRHPAQRHAFLC 108
>11_01_0460 + 3561490-3564104,3564162-3564558
Length = 1003
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 4 PTDTVMIWKXDQYFCSHRNLLARV 75
P +M W YFCS +L RV
Sbjct: 26 PQQALMSWNDSNYFCSWEGVLCRV 49
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = +3
Query: 294 KTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLN 473
K SV++A+D Q P+ A+ + E+ G G Q EC+ + +VLA + N
Sbjct: 2288 KIASVVIAVDDQDPSNASDKDAPASTEDDGNGLQS-----------ECVHVDLVLAKQDN 2336
Query: 474 QKIAELRRNGE 506
K+ + +++ +
Sbjct: 2337 TKVEDTQKSNQ 2347
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,292,999
Number of Sequences: 37544
Number of extensions: 399726
Number of successful extensions: 1100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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