Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_P11
(599 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.) 309 1e-84
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.) 271 2e-73
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.) 231 3e-61
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.) 154 6e-38
SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056) 85 5e-17
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0) 79 4e-15
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23) 31 0.54
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20) 31 0.71
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0) 29 2.2
SB_20311| Best HMM Match : PAN (HMM E-Value=0.00055) 29 2.9
SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14) 27 8.8
SB_45865| Best HMM Match : Adeno_E4_34 (HMM E-Value=6) 27 8.8
>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 309 bits (758), Expect = 1e-84
Identities = 142/188 (75%), Positives = 160/188 (85%)
Frame = +3
Query: 36 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKA 215
+ FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACET+ KTGM+LLCGEITS A
Sbjct: 29 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMILLCGEITSNA 88
Query: 216 NVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQ 395
VDYQ VVR+ +K IGYDDS KGFDYKTC+V++AL+QQS +IA GVH R +E+VGAGDQ
Sbjct: 89 VVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDIAHGVHVGREEEDVGAGDQ 148
Query: 396 GLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPXSKTQVTCEYVFAGGAT 575
GLMFGYATDETEE MPLTVVLAHK+NQK+AE RR+G WARP SKTQVT EY F G
Sbjct: 149 GLMFGYATDETEELMPLTVVLAHKMNQKLAEYRRDGTLPWARPDSKTQVTVEYKFEHGRA 208
Query: 576 VPQXVHTV 599
+P VHT+
Sbjct: 209 IPLRVHTI 216
>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 271 bits (665), Expect = 2e-73
Identities = 129/186 (69%), Positives = 145/186 (77%)
Frame = +3
Query: 42 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 221
FLFTSESV EGH DKMCDQISDA+LDAHL QDP AKVACET TKTG+VLL GEITS A V
Sbjct: 52 FLFTSESVNEGHSDKMCDQISDAVLDAHLEQDPYAKVACETATKTGLVLLFGEITSNARV 111
Query: 222 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 401
DYQ VVR T++ IGY+DSS GFDYKTCSV+LA+ +Q IA VH NR D+E+GAGDQGL
Sbjct: 112 DYQAVVRNTIRDIGYNDSSTGFDYKTCSVLLAIQEQVAEIAQTVHLNRRDDEIGAGDQGL 171
Query: 402 MFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPXSKTQVTCEYVFAGGATVP 581
MFGYATDETEE MPLT VLAHKL ++AE R+ W P KTQVT +Y GA +P
Sbjct: 172 MFGYATDETEELMPLTTVLAHKLCARLAECRKGKILPWLLPDGKTQVTVDYRLERGACIP 231
Query: 582 QXVHTV 599
+ VHTV
Sbjct: 232 ERVHTV 237
>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 231 bits (565), Expect = 3e-61
Identities = 103/146 (70%), Positives = 124/146 (84%)
Frame = +3
Query: 162 TITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNI 341
++ KTGM+++CGEITS ANVDYQKVVR+T+K IGYDDSSKGFDYKTC+V+ A++QQSP+I
Sbjct: 2 SVAKTGMIVVCGEITSLANVDYQKVVRDTIKQIGYDDSSKGFDYKTCTVLQAIEQQSPDI 61
Query: 342 AAGVHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWAR 521
A GVH R+DE++GAGDQGLMFGYATDET+E MPLTVVLAH LN+++A+ RRNG W R
Sbjct: 62 AQGVHIGRSDEDLGAGDQGLMFGYATDETDELMPLTVVLAHGLNKRLADCRRNGSLPWVR 121
Query: 522 PXSKTQVTCEYVFAGGATVPQXVHTV 599
P SKTQVT EY F GG VP VHT+
Sbjct: 122 PDSKTQVTVEYKFQGGKAVPLRVHTI 147
>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 154 bits (373), Expect = 6e-38
Identities = 68/82 (82%), Positives = 77/82 (93%)
Frame = +3
Query: 36 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKA 215
+ FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACE++ KTGM+++CGEITS A
Sbjct: 9 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACESVAKTGMIVVCGEITSLA 68
Query: 216 NVDYQKVVRETVKHIGYDDSSK 281
NVDYQKVVR+T+K IGYDDSSK
Sbjct: 69 NVDYQKVVRDTIKQIGYDDSSK 90
>SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)
Length = 70
Score = 84.6 bits (200), Expect = 5e-17
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +3
Query: 36 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVAC 158
+ FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVAC
Sbjct: 29 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVAC 69
>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
Length = 192
Score = 78.6 bits (185), Expect = 4e-15
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +3
Query: 372 EEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPXSKTQVTCE 551
E+ GAGDQGLMFGYAT+ET+ MP V AH+L ++ +ELRRNG W RP +K+QVT
Sbjct: 8 EDQGAGDQGLMFGYATNETDSLMPAPVYYAHRLVERQSELRRNGTLPWLRPDAKSQVTIN 67
Query: 552 Y 554
+
Sbjct: 68 W 68
>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
Length = 390
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +3
Query: 195 GEITSKANVDYQKVVRETV---KHIGYDDSSKGFDYK 296
GEITS N+D +K+ + K I YD G+DY+
Sbjct: 103 GEITSNVNIDREKLPGSNLLEFKAIAYDAKGAGYDYR 139
>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
Length = 681
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 417 LHNRTSSPGLLPQLPRHFCSHAPQQQCLVIVGL 319
L N T+ P + PQ P H SHA + ++I G+
Sbjct: 99 LGNETARPAIAPQEPEHLVSHANKILTVIIQGM 131
>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
Length = 550
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 163 VSHATFASGS*FRCASRIASLIWSHILSG 77
+S + A + FRC+ R S++W H+ +G
Sbjct: 287 ISDSDLAKVASFRCSGRFPSIVWRHMTNG 315
>SB_20311| Best HMM Match : PAN (HMM E-Value=0.00055)
Length = 443
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Frame = +2
Query: 329 ITKHCC-WGA*EQK*RGSWGRRPGL-DVRLCNR*DRRMHAVDCSACTQTQSENCRAQAKW 502
+T++C WG+ G WG+ L D R CS C Q Q E + W
Sbjct: 259 LTRNCAKWGSNGTLPEGEWGKNALLKDGTKTETSKIRRQFQQCSVCYQIQPETTKCFIAW 318
Query: 503 RILVGKTXFKNTGYLRI 553
+ + Y+RI
Sbjct: 319 TKSLRTILHRRKKYIRI 335
>SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14)
Length = 334
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 378 LPRHFCSHAPQQQCLVIVGLVRASHCMSCNQSL-WTNHHN 262
L R FC +C+ I+G R S+ + W HH+
Sbjct: 106 LSRLFCERLDSNECVFIIGAQRFSNYTGYAHTFKWAGHHD 145
>SB_45865| Best HMM Match : Adeno_E4_34 (HMM E-Value=6)
Length = 766
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 303 SVMLALDQQSPNIAAG-VHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQK 479
S +AL ++S + AAG + ++ G +M D+ EC P +++ A LN+K
Sbjct: 613 SQAVALLRRSVHAAAGRLDDSHVMSSRGTHRVEIMLRLLPDDFAECSPDSLMFARALNEK 672
Query: 480 IAEL 491
I +L
Sbjct: 673 IYKL 676
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,380,690
Number of Sequences: 59808
Number of extensions: 484728
Number of successful extensions: 1294
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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