Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_P10
(657 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.) 201 5e-52
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 57 1e-08
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098) 33 0.27
SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_19759| Best HMM Match : HATPase_c (HMM E-Value=1.1e-13) 30 1.9
SB_2932| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_2254| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_46104| Best HMM Match : rve (HMM E-Value=1.4e-10) 30 1.9
SB_11794| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05) 30 1.9
SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16) 29 2.5
SB_39850| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_26190| Best HMM Match : rve (HMM E-Value=3.1e-26) 29 2.5
SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27) 29 2.5
SB_4788| Best HMM Match : rve (HMM E-Value=0) 29 2.5
SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26) 29 2.5
SB_46362| Best HMM Match : rve (HMM E-Value=3e-26) 29 2.5
SB_42299| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_39172| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39) 29 2.5
SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 29 2.5
SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_15856| Best HMM Match : RVT_1 (HMM E-Value=1.3e-27) 29 3.3
SB_52367| Best HMM Match : RnaseH (HMM E-Value=0.53) 29 3.3
SB_45058| Best HMM Match : rve (HMM E-Value=2.6e-05) 29 3.3
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 29 4.4
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 29 4.4
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018) 28 5.8
SB_9151| Best HMM Match : WAP (HMM E-Value=0.045) 28 5.8
SB_7649| Best HMM Match : PolyA_pol (HMM E-Value=6.4) 28 5.8
>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 201 bits (490), Expect = 5e-52
Identities = 96/110 (87%), Positives = 102/110 (92%)
Frame = +3
Query: 174 YKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSGID 353
YKTVSGVNGPLVILD VKFPKF+EIV L L DG+ RSG+VLEVSGSKAVVQVFEGTSGID
Sbjct: 14 YKTVSGVNGPLVILDNVKFPKFAEIVTLTLQDGSQRSGEVLEVSGSKAVVQVFEGTSGID 73
Query: 354 AKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQ 503
AK+T CEFTGDILRTPVSEDMLGRVFNGSGK ID+GPP+LAEDFLDIQ Q
Sbjct: 74 AKHTTCEFTGDILRTPVSEDMLGRVFNGSGKAIDRGPPVLAEDFLDIQAQ 123
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/98 (30%), Positives = 51/98 (52%)
Frame = +3
Query: 333 EGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPIN 512
+GT G+ + C TG + PV + LGR+ N G+PID+ P+ + I +
Sbjct: 127 DGTEGL-IRGQKCVDTGGPITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAEAPE 185
Query: 513 PWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGL 626
+E+++TGI +D++ A+G KI +F AG+
Sbjct: 186 FVEMSTEQEILETGIKVVDLLAPYAKGGKIGLFGGAGV 223
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 49.2 bits (112), Expect = 3e-06
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +3
Query: 321 VQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPID-KGPPILAEDFLDIQ 497
V VF G + + + + TG I+ PV E++LGRV + G PID KGP + ++
Sbjct: 12 VVVF-GNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTRARVGVK 70
Query: 498 GQPINPWSRIYPEEMIQTGISAIDVMNSIARGQK 599
I P R +E + TGI A+D + I RGQ+
Sbjct: 71 APGIIP--RTSVKEPMLTGIKAVDSLVPIGRGQR 102
>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
Length = 620
Score = 32.7 bits (71), Expect = 0.27
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -3
Query: 481 SSAKIGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPL 302
SS+ + P + P PL + ++S + + SP+ S S +S P + S + T+ PL
Sbjct: 181 SSSPLTSPSPLTSPSPLTSSSPLTSSSPLTSSSPLTSSSPLTSSSP-LTSPSPLTSSSPL 239
Query: 301 TSST 290
TSS+
Sbjct: 240 TSSS 243
Score = 31.1 bits (67), Expect = 0.83
Identities = 26/94 (27%), Positives = 43/94 (45%)
Frame = -3
Query: 457 LSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPLTSST*PER 278
+S P PL + ++S + + SP+ S S +S P + S++ T+ PLTSS+
Sbjct: 165 ISAYFPSPLTSSSPLTSSSPLTSPSPLTSPSPLTSSSP-LTSSSPLTSSSPLTSSSPLTS 223
Query: 277 RVPSASFSCTISENLGNLTSSKMTRGPFTPDTVL 176
P S S S + +S + P T + L
Sbjct: 224 SSPLTSPSPLTSSSPLTSSSPLTSSSPLTSSSPL 257
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = -3
Query: 481 SSAKIGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPL 302
SS+ + + P PL + ++S + + SP+ S S +S P + S++ T+ PL
Sbjct: 175 SSSPLTSSSPLTSPSPLTSPSPLTSSSPLTSSSPLTSSSPLTSSSP-LTSSSPLTSPSPL 233
Query: 301 TSST 290
TSS+
Sbjct: 234 TSSS 237
>SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPGR 105
++ Y +HS EP +G V +LPG W+PG+
Sbjct: 949 QKXYYDKHSKPLEPIAVGETVRIKLPGQDTWTPGQ 983
>SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 473 GRGLLGHPGSAHQPMVTYLPRGDDPNWYLRY*CDELYCPWSEDP 604
GRG+ G+ H P + D W RY +CP+ ++P
Sbjct: 38 GRGIGGYHQLCHDPSIPAKAVEPDEPWMCRYCSVGAFCPYLQNP 81
>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1565
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +3
Query: 372 EFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINP 515
E T D +R PV+ +L RV+NGS + D LAE+ ++G + P
Sbjct: 1111 EETRDEIRDPVTRQILDRVYNGSVEFADLWVSGLAEN--PVKGASVGP 1156
>SB_19759| Best HMM Match : HATPase_c (HMM E-Value=1.1e-13)
Length = 295
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPGR 105
++ Y +HS EP +G V +LPG W+PG+
Sbjct: 19 QKFYYDKHSKPLEPIAVGETVRMKLPGQDTWTPGQ 53
>SB_2932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPGR 105
++ Y +HS EP +G V +LPG W+PG+
Sbjct: 112 QKFYYDKHSKPLEPIAVGETVRMKLPGQDTWTPGQ 146
>SB_2254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPGR 105
++ Y +HS EP +G V +LPG W+PG+
Sbjct: 19 QKFYYDKHSKPLEPIAVGETVRMKLPGQDTWTPGQ 53
>SB_46104| Best HMM Match : rve (HMM E-Value=1.4e-10)
Length = 263
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
++ Y +HS EP +G V +LPG W+PG
Sbjct: 158 QKFYYNKHSKPLEPIAVGETVRMKLPGQDTWTPG 191
>SB_11794| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)
Length = 331
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 367 SASSRVTFFVHRSLKTCWVACSTVPANPSTRVPQSWPRTSWTSRVSPSTHGHVSTQRR 540
S + ++ F +H +L + + T ANP+++ P TS S +PS + +T R
Sbjct: 192 STTCKMGFQLHPNLNSVCIPIPTPTANPTSKPMPQLPPTSPPSTTTPSMPANHTTDNR 249
>SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16)
Length = 608
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
++ Y +HS EP +G V +LPG W+PG
Sbjct: 490 QKFYYDKHSKPLEPIAVGETVRMKLPGQDTWTPG 523
>SB_39850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
++ Y +HS EP +G V +LPG W+PG
Sbjct: 98 QKFYYDKHSKPLEPIAVGETVRMKLPGQDTWTPG 131
>SB_26190| Best HMM Match : rve (HMM E-Value=3.1e-26)
Length = 316
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
++ Y +HS EP +G V +LPG W+PG
Sbjct: 211 QKFYYDKHSKPLEPIAVGETVRMKLPGQDTWTPG 244
>SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27)
Length = 1036
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
++ Y +HS EP +G V +LPG W+PG
Sbjct: 931 QKFYYDKHSKPLEPIAVGETVRMKLPGQDTWTPG 964
>SB_4788| Best HMM Match : rve (HMM E-Value=0)
Length = 1125
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
++ Y +HS EP +G V +LPG W+PG
Sbjct: 457 QKFYYDKHSKPLEPIAVGETVRMKLPGQDTWTPG 490
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
++ Y +HS EP +G V +LPG W+PG
Sbjct: 1007 QKFYYDKHSKPLEPIAVGETVRMKLPGQDTWTPG 1040
>SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26)
Length = 455
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
++ Y +HS EP +G V +LPG W+PG
Sbjct: 337 QKFYYDKHSKPLEPFAVGETVRMKLPGQDTWTPG 370
>SB_46362| Best HMM Match : rve (HMM E-Value=3e-26)
Length = 455
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
++ Y +HS EP +G V +LPG W+PG
Sbjct: 337 QKFYYDKHSKPLEPIAVGETVRMKLPGQDTWTPG 370
>SB_42299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
++ Y +HS EP +G V +LPG W+PG
Sbjct: 121 QKFYYDKHSKPLEPIAVGETVRMKLPGQDTWTPG 154
>SB_39172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
++ Y +HS EP +G V +LPG W+PG
Sbjct: 156 QKFYYDKHSKPLEPIAVGETVRMKLPGQDTWTPG 189
>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
Length = 1060
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
++ Y +HS EP +G V +LPG W+PG
Sbjct: 211 QKFYYDKHSKPLEPIAVGETVRMKLPGQDTWTPG 244
>SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 960
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
++ Y +HS EP +G V +LPG W+PG
Sbjct: 842 QKFYYDKHSKPLEPIAVGETVRMKLPGQDTWTPG 875
>SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1164
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
++ Y +HS EP +G V +LPG W+PG
Sbjct: 651 QKFYYDKHSKPLEPIAVGETVRMKLPGQDTWTPG 684
>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
++ Y +HS EP +G V +LPG W+PG
Sbjct: 1050 QKFYYDKHSKPLEPIAVGETVRMKLPGQDTWTPG 1083
>SB_15856| Best HMM Match : RVT_1 (HMM E-Value=1.3e-27)
Length = 514
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 194 YTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
Y +HS EP +G V +LPG W+PG
Sbjct: 400 YDKHSKPLEPIAVGETVRMKLPGQDTWTPG 429
>SB_52367| Best HMM Match : RnaseH (HMM E-Value=0.53)
Length = 325
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
++ Y +HS EP +G V +LPG W+PG
Sbjct: 207 QKFYYYKHSKPLEPIAVGETVRMKLPGQDTWTPG 240
>SB_45058| Best HMM Match : rve (HMM E-Value=2.6e-05)
Length = 272
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 206 ERTVYTRHSLVSEP-GLGNEVPWRLPGHVPWSPG 108
++ Y +HS EP +G V +LPG W+PG
Sbjct: 154 QKFYYYKHSKPLEPIAVGETVRMKLPGQDTWTPG 187
>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 238
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 549 TGISAIDVMNSIARGQKIPIFSAAGL 626
TGI ID++ A+G KI +F AG+
Sbjct: 5 TGIKVIDLIEPYAKGGKIGLFGGAGV 30
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = -3
Query: 484 KSSAKIGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTAL 311
+S+++IGG + + PL+ S + + R P QSV S+PD+ +N T AL
Sbjct: 355 ESASRIGGCVLRTVSRPLSAPMPRRSISDLARELPTPRQSVRSVSLPDL-TNVETLAL 411
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 406 LKTCWVACSTVPANPSTRVPQSWPRTSWTSRVSPSTHGHVST 531
L TC ++ + P+ PSTR S P T T +PST ST
Sbjct: 632 LCTCTLSTPSTPSTPSTRSTPSTPSTPSTPS-TPSTPSTPST 672
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -3
Query: 469 IGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTT 317
I G +S + + T S T +R +++Q F +PD PS+ +T+
Sbjct: 563 ISGDISFAMCDKSITNNTKSFHTKIRTPVQLSNQGSFTRKLPDAPSDHFTS 613
>SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018)
Length = 541
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 439 PANPSTRVPQSWPRTSWTSRVSPSTH 516
P + TR P+S PR + TS+ +PS+H
Sbjct: 93 PVSVPTRSPKSPPREAKTSKKTPSSH 118
>SB_9151| Best HMM Match : WAP (HMM E-Value=0.045)
Length = 1865
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 397 HRSLKTCWVACSTVPANPSTRVPQSWPRTSWTSR 498
H +TC+ +P NP S +SWTSR
Sbjct: 148 HEGQRTCFATKQFLPGNPCQWCDPSVSTSSWTSR 181
>SB_7649| Best HMM Match : PolyA_pol (HMM E-Value=6.4)
Length = 318
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 461 TLVDGFAGTVEHATQHVFRDRCTKNVTRELAEC 363
T+VD G V+ VF T+N+TR+L C
Sbjct: 182 TVVDTLEGFVDPFDLDVFSPHITRNLTRQLQRC 214
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,940,478
Number of Sequences: 59808
Number of extensions: 556379
Number of successful extensions: 1514
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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