Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P09
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   2.3  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   5.4  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   5.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    20   9.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    20   9.4  

>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 55  FRNDDWNGEAFDXTE 11
           F  + WNG++FD ++
Sbjct: 226 FYQEGWNGQSFDVSQ 240


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 79  PEFXHTGRFRND 44
           PEF H+G   ND
Sbjct: 70  PEFVHSGMVHND 81


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 79  PEFXHTGRFRND 44
           PEF H+G   ND
Sbjct: 70  PEFVHSGMVHND 81


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 8   CLSRIKSFAIPVVISKSPSM 67
           CL  I +  +P+VI K+  M
Sbjct: 80  CLGVIGNVMVPIVIFKTKDM 99


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 8   CLSRIKSFAIPVVISKSPSM 67
           CL  I +  +P+VI K+  M
Sbjct: 80  CLGVIGNVMVPIVIFKTKDM 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,930
Number of Sequences: 336
Number of extensions: 1108
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)