Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_P09
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   4.1  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    24   9.4  

>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 12/57 (21%), Positives = 30/57 (52%)
 Frame = +2

Query: 20  IKSFAIPVVISKSPSMXKLWSECSRRHXMSLERTLAGLISQTTKNRSRLKYWYQKVL 190
           + S + P +++K  S+ +  S+   +H     RT+  L  + + +++  K W +K++
Sbjct: 7   LDSSSEPSIVTKQFSVEECLSKLKEQHCYVPMRTIGRLRLRKSSDQTEKKCWKEKLM 63


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 222 FIESTLVCDFCDILLL 269
           F++  L+CDFC  +L+
Sbjct: 210 FVDLILMCDFCSYILM 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,102,962
Number of Sequences: 5004
Number of extensions: 17387
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)